Query= MSMg01no296_p01.b1 MSMg01no296_p01.b1 CHROMAT_FILE:
MSMg01no296_p01.b1 PHD_FILE: MSMg01no296_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:15 2005
(249 letters)
>mm_chr5_42437176_42437824
Length = 649
Score = 395 bits (204), Expect = e-114
Identities = 233/246 (94%), Gaps = 7/246 (2%)
Strand = Plus / Minus
Query: 5 gaattctgtttaagacaataggtttgtttttgttttttgttttttgttttttttggtttt 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 589 gaattctgtttaagacaataggtttgtttttgttttttgttttttgtttt-----gtttt 535
Query: 65 tttttttttttatcttgacctctcaactcagaacaggcccatgggttggtgattct--aa 122
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 534 ttgttttttttatctttacctctcaactcagaacaggcccatgggttggtgattctaaaa 475
Query: 123 aaaaaaaaaaaaaaaaaaaaaaaaaacgaagtgtaatgtaaatacagggaagcaaaaaaa 182
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 474 aaaaaaaaaaaaaaaaaaaaaaaaaacgaagtataatgtaaatacagggaagcaaagaaa 415
Query: 183 acaaggaaatatggaacgaaaaagtgaatactactactaataggaagtaaacaattaggc 242
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ataaggaaatatggaacgaagaagtgaatactactactaataggaagtaaacaattaggc 355
Query: 243 ctccca 248
||||||
Sbjct: 354 ctccca 349
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_p01.g1 MSMg01no296_p01.g1 CHROMAT_FILE:
MSMg01no296_p01.g1 PHD_FILE: MSMg01no296_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:15 2005
(288 letters)
>mm_chr5_42265107_42265794
Length = 688
Score = 547 bits (283), Expect = e-160
Identities = 288/291 (98%), Gaps = 3/291 (1%)
Strand = Plus / Plus
Query: 1 cttgtgcagctgatggtgagctttagctgctgatactcctgccttcatggctctactgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtgcagctgatggtgagctttagctgctgatactcctgccttcatggctctactgcc 260
Query: 61 atgactacacatgtgtgctgtaatcacacatggctggttatgtctgtttccttgggtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgactacacatgtgtgctgtaatcacacatggctggttatgtctgtttccttgggtcaa 320
Query: 121 atatatattgactagccaccattgatggagtgtgacctgccaagtagacaaacttgggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatatattgactagccaccattgatggagtgtgacctgccaagtagacaaacttgggtt 380
Query: 181 ttaacttggctgagctggatatgatctaggcattggcattactttccaaagtaagcttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaacttggctgagctggatatgatctaggcattggcattactttccaaagtaagcttgt 440
Query: 241 gtctcattttctttattattattatta---atttattattattattattat 288
||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gtctcattttctttattattattattattaatttattattattattattat 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
