BAC Information

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BAC

Clone NameMSMg01-296P19
Chromosome5 (Build37)
Map Location 14,707,468 - 14,707,785
singlet/doubletsinglet
Overlap genePclo
Upstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296P19.T7 (MSMg01no296_p19.b1)MSMg01-296P19.TJ (MSMg01no296_p19.g1)
ACCAG424449AG424450
length754773
length of high quality
(start - end)		321 (45 - 365)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no296_p19.b1 PHD_FILE: MSMg01no296_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:19 2005CHROMAT_FILE: MSMg01no296_p19.g1 PHD_FILE: MSMg01no296_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGAAAAAAAATACATGGTCTGGGAACCTACAAAACAAAACTTTGA
AAACTGTATCTATATTAAAATCTCAATCAAACCATGTCGTTCTCTTCCAG
GGAGTGAAGGCATTCCTGGTTATTACATCAGGGTCAAATTATCCAGGATC
ATATGAAATACAGGGGCAAACCATCAAAGTGTCACTATTCAGTCACTGGG
TCTGCTGCTGATACACTTCACTGGTTAGGAATCAGTGTGGTTTTGTCTAA
GGGAAAACTGTGACAGCCCAATTTAATTTCCTTCAGTGATAATGCAGCTG
TCAGAGTAGATAATCTTTTATTGAATACCCCCCCCCCCAGCAGTGCATCA
GCAGGACACTTAATGTCTTCCCCCCATGGACGCAAAAATAGATTTGGCTG
TCGGAATGGAGAAGAACAATATGATCTATTGGGTACGCATACAGATTATG
GGCATTTATGCTCTGACATGCACCCACACATGCATGCATAGGCAGGCATG
AATCCGAGCCCGCACCTTCACACAAACACACACACACACACACACACCAC
ACACACATACATAATATATATCTTACCCTTGTTACTAATCTTTTGGAGCC
AGATTTTTCACCACATTGAGTGACTGTTTTCTGCTATGGAAGATGTTTAT
CTATATCTATGGTCTCTATCTACCATATATTATATAAAAATAATGTTGTC
ATGT

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGTGCCCCATTTTT
AATGGGGTTATTTGGTTTTCTGGAGTTCATCTTCTTGAGTTCTTTATATA
TATTGGATAGCTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAACACAG
AAGTGGATGCTCACAGTCAGCTATTGTATGAAACACAGAGCCCCCAGTGG
AGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAG
GTGGAACAACACTATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCCAG
CTGCATATGTAGGATATTTTTGTTCTACCCNGGCCATCCCTGGGAAGAGA
GGCCCCTTGGTCTTGCAAACCCCACCACCCCCAAAAAAAAAAAAAAACCG
GGGGGGGGAGGTGGGACTGGGTGGGTAATGGGGGGGGAGTTTTNATTACT
TTCCAATTTATTTTTTTCTATAAATCCTCCATTTTTTCCCCCCCCATTTC
CCTCCCCATAAATTTATATTCTCCTCTCCCCCTCCCCGCCCCCATACTAC
CTTCTCTCCCTTATATTTTTATTTTTTATCTCCACGACTTTGAATATTAT
ACCAATATTACCCTTCCCCTCCCCTATTCTTATCTCCCCCCCTCCCCTCT
CGTCTTACCTTCATATTTCCTTTCTCTGCTTTTATTCCTTCCCATTCCCC
CCCCTCTCGTTTTTTTTTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_p19.b1 MSMg01no296_p19.b1 CHROMAT_FILE:
MSMg01no296_p19.b1 PHD_FILE: MSMg01no296_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:19 2005
         (321 letters)



>mm_chr5_14707265_14707985
          Length = 721

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%), Gaps = 2/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggaaaaa-aaatacatggtctgggaacctacaaaacaaaactttgaaaactg 62
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 521 ggaattctggaaaaataaatacat-gtctgggaacctacaaaacaaaactttgaaaactg 463

                                                                       
Query: 63  tatctatattaaaatctcaatcaaaccatgtcgttctcttccagggagtgaaggcattcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tatctatattaaaatctcaatcaaaccatgtcgttctcttccagggagtgaaggcattcc 403

                                                                       
Query: 123 tggttattacatcagggtcaaattatccaggatcatatgaaatacaggggcaaaccatca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tggttattacatcagggtcaaattatccaggatcatatgaaatacaggggcaaaccatca 343

                                                                       
Query: 183 aagtgtcactattcagtcactgggtctgctgctgatacacttcactggttaggaatcagt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aagtgtcactattcagtcactgggtctgctgctgatacacttcactggttaggaatcagt 283

                                                                       
Query: 243 gtggttttgtctaagggaaaactgtgacagcccaatttaatttccttcagtgataatgca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtggttttgtctaagggaaaactgtgacagcccaatttaatttccttcagtgataatgca 223

                              
Query: 303 gctgtcagagtagataatc 321
           |||||||||||||||||||
Sbjct: 222 gctgtcagagtagataatc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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