BAC Information

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BAC

Clone NameMSMg01-297C22
Chromosome5 (Build37)
Map Location 148,493,862 - 148,659,596
singlet/doubletdoublet
Overlap geneFlt1, LOC100039825
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream genePomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297C22.T7 (MSMg01no297_c22.b1)MSMg01-297C22.TJ (MSMg01no297_c22.g1)
ACCAG424588AG424589
length755766
length of high quality
(start - end)
350 (46 - 395)397 (77 - 473)
definitionCHROMAT_FILE: MSMg01no297_c22.b1 PHD_FILE: MSMg01no297_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:34 2005CHROMAT_FILE: MSMg01no297_c22.g1 PHD_FILE: MSMg01no297_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,493,862 - 148,494,208)(148,659,200 - 148,659,596)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATACATATCACGATGGCCTGGTGCTGAAGAGAGACAATCCCCCC
CGACTCCACCTCCCTTGTCCACTGGATCCAGAGGGACATCTTCATGTGTT
GTCATCATCTAGAACATTCTAGAATCTACAGCAACTCACAAATAAGGTAT
TGTAACTAGCTAGCCCTGCAATTCCAGCCCCCCTTACCCACATTAGAGGA
ACACATAAGGAGGAACACTGAGTAGGAAGTCACGAGCTTGACTCCATGGT
CCAGCGTGACCATGAGTCCCCTGCAACATGTTACCTAGGAATTTTCTTGG
GCAGTTGAGTAAGACTCCCCTGTTATTCCCAGCTCTGACACCTACAGGCC
ACAGGCCCACAGATGGGACGGCGGGTTCAAACCCGTTTCTTGAAGGGAAA
CTCCAAGGCACTGGATGAATCACAAAGTTCTTCTGGATTTCCCAACTACA
GGCCACTGGTTTTGCCAGTTAACTTCCCTGGGGGGGAACTGGAACAAGGT
GCCTGCCCCTTGGGTTAAAATTTGAAAAAAAAGGGGAGGGGGAGAATTGG
TGGGTTCCTTTACCCCCCCTGAGTTTTCCTTTGGGGGATAATTTGTGAAG
GGGGGCTCCAAGAGACCCCTTGACACCCACAATTTGGGAAATATTTTTAT
GTTCAAATGTAGGCACCCCCACAAAACGCGCACCTAATAAAAAATATATT
TTCTT
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAGTGTATAAACCATTTAGAAC
TTCCAAGAGTTCACTTACAGATCCAGCCCTAGTCTCAAATTCCTGGAAGG
AAATATTGTCCAAAGGGAATACGGAGATAAAGTTTCTAAGGTTTTGCTCT
AAGGGAACAGTTAGTCCAGGGGATTACCCCAAGATATAAAACGGAGCCCC
TATGGTGGAGCTTAGCTCGGGCGCACATGATTGGCCGTCAGAAAGGAATG
GAGTTTGGATTTGCTGGATGGAATTTAGGGAGTTTATTCCTTATTCTTTC
CCAGGACCCCAAATTGACAATTGGCCAGCTAAATGAAATTGTTGGAGAAG
GTTATGGGAATAAGAAAAGAGAGAGAGAGAGAGATTTAGAGATTTAGAGA
GTTACAAGTCTGAGCATATTGTTGTTCTGGCTCTGAGCCAGCGAACGGTC
GGTGGAAAGCACACGAGGGGAGTTAATTCAAGGCTGAGCCTTCGCATAAA
CTGGAAATTGTGTAATCCTTGGATTTAGAGATCATGTGTCCTTGACGGCT
TCCCAAAAGCTAAAAGTCCCCTATAAATTGTCCTGGGAGGCAAGGGCTTG
AAAGTCCCCCAAAAATATCTATGGGAGGGCCGGGAATTTCTGGGGAAATT
TTCTAACCTTGATAACCCCCGACCGTTCTTTTCCCAGAAAAAATTCTTAT
CTCTAGGCATTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_c22.b1 MSMg01no297_c22.b1 CHROMAT_FILE:
MSMg01no297_c22.b1 PHD_FILE: MSMg01no297_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:34 2005
         (350 letters)



>mm_chr5_148493659_148494408
          Length = 750

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctcatacatatcacgatggcctggtgctgaagagagacaatcccccccgactcca 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcatacatagcaagatggcctggtgctgaagagagacaatcccccccgactcca 263

                                                                       
Query: 64  cctcccttgtccactggatccagagggacatcttcatgtgttgtcatcatctagaacatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctcccttgtccactggatccagagggacatcttcatgtgttgtcatcatctagaacatt 323

                                                                       
Query: 124 ctagaatctacagcaactcacaaataaggtattgtaactagctagccctgcaattccagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctagaatctacagcaactcacaaataaggtattgtaactagctagccctgcaattccagc 383

                                                                       
Query: 184 cccccttacccacattagaggaacacataaggaggaacactgagtaggaagtcacgagct 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccccttacccacagtagaggaacacataaggaggaacactgagtaggaagtcacgagct 443

                                                                       
Query: 244 tgactccatggtccagcgtgaccatgagtcccctgcaacatgttacctaggaattttctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgactccatggtccagcgtgaccatgagtcccctgcaacatgttacctaggaattttctt 503

                                                          
Query: 304 gggcagttgagtaagactcccctgttattcccagctctgacacctac 350
           ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 504 gggcagttgagtaagactcccctgttattcccagccctgacacctac 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no297_c22.g1 MSMg01no297_c22.g1 CHROMAT_FILE:
MSMg01no297_c22.g1 PHD_FILE: MSMg01no297_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:34 2005
         (397 letters)



>mm_chr5_148659000_148659796
          Length = 797

 Score =  706 bits (365), Expect = 0.0
 Identities = 389/397 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagtgtataaaccatttagaacttccaagagttcacttacagatccagccctagtctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 597 aatagtgtataaaccatttagaacttccaagagttcacttacagatccagtcctagtctc 538

                                                                       
Query: 61  aaattcctggaaggaaatattgtccaaagggaatacggagataaagtttctaaggttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaattcctggaaggaaatattgtccaaagggaatacggagataaagtttctaaggttttg 478

                                                                       
Query: 121 ctctaagggaacagttagtccaggggattaccccaagatataaaacggagcccctatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctctaagggaacagttagtccaggggattaccccaagatataaaacggagcccctatggt 418

                                                                       
Query: 181 ggagcttagctcgggcgcacatgattggccgtcagaaaggaatggagtttggatttgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggagcttagctcgggcgcacatgattggccgtcagaaaggaatggagtttggatttgctg 358

                                                                       
Query: 241 gatggaatttagggagtttattccttattctttcccaggaccccaaattgacaattggcc 300
           |||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 357 gatggaacaaagggagtttattccttattctttcccaggaccccaaattgacaattggtc 298

                                                                       
Query: 301 agctaaatgaaattgttggagaaggttatgggaataagaaaagagagagagagagagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agctaaatgaaattgttggagaaggttatgggaataagaaaagagagagagagagagatt 238

                                                
Query: 361 tagagatttagagagttacaagtctgagcatattgtt 397
           | |||||||||||||||||  ||||||||||||||||
Sbjct: 237 tggagatttagagagttacttgtctgagcatattgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)