BAC Information

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BAC

Clone NameMSMg01-297F06
Chromosome5 (Build37)
Map Location 43,153,619 - 43,153,909
singlet/doubletsinglet
Overlap genenone
Upstream geneBapx1, A230054D04Rik, LOC384308, LOC100040588, EG636612
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297F06.T7 (MSMg01no297_f06.b1)MSMg01-297F06.TJ (MSMg01no297_f06.g1)
ACCAG424692AG424693
length767765
length of high quality
(start - end)
336 (332 - 667)287 (330 - 616)
definitionCHROMAT_FILE: MSMg01no297_f06.b1 PHD_FILE: MSMg01no297_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:45 2005CHROMAT_FILE: MSMg01no297_f06.g1 PHD_FILE: MSMg01no297_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGNGCACGTGCGCGGA
ATTCACTACTGATGACGAAAAAGAGGCTGAAAAGCAGCTAAAGAAATGTT
CAAAGTCCTTAGTGATCAGAGAAACGTAAATCAAAATGACCCTGAGATAA
CTTACACCAATCAGAATGGCTAAGATCAAAAACTCAGGAGACAACACATG
GTGGAGAGGATTTGGAGAAAGAAGAATACTCCTCCATTGCTAGTGGGTTT
GCAAACTGGTACAACCACTCTGGAAATTAATCTGGAGGTACCTCAGAAAA
TTGAAAATAGATCTATCTGAAGATCCTCNATAACCCCCTTGGGAATATAC
TCAAAAGATGCCCCACCATGCCACATGGGCACGTGTTCCACTATGTTCAT
TGGGACATTATTTGTGATGGCAAGAAACTTATAACAAGCTAGATGTCCCA
CAACAGAAGAATGGATACGGAAAATGTGGTTCATTTACACAATGGAATAC
TACTAAGCTATTAAGAATGAGGACATCCTGAGTTTTGCAGCCAAATGGAT
GGAACTAGAAAATATCATCCTGAGTGAGGTAATTCAGACCCAAAAGGACA
TGCATGGTATGTACTCACTAATAAGTAGATACTAGCCAAAAAAAAAAAAA
AGTACAGAATGCCCAAGATACTGTCCACAGAACTCAGTAAGGCCAACAAT
GTGAAAGGCCCAAGTGAGTATGCCTCAGTCCCACTTANGATGTAGAAGAA
AACAATCTCAAGTGGGG
CGATGCAGTGGGAGGCCTGGNGGNCGCCTGGATCGGTACCGGAGGNGAAC
TATAGAAGGTTGCTANGATTACAAGAAAAGGGATTCTCGCAGCAAGGGGC
AGTTCAACAAATGAGAAGGACCTATATTGGGAGAAAATTTGGGTTCAAAG
TCTTCCTCTGTCTTGACAGCCATGTGACCTTGGACAAGTTACTCAATTAT
TCCACTCTACTGTTTCCTAATGGTAGAATGAGGACAATTGCAGTCATGTA
AAATTAAACAAAACAAAACAAAAACAAAAACAAAAACAAAAACAAAAAAC
TGTCAGATGTGACCTATATCTTCGTCTTTAGAAGCCAAATACTTTGTGCC
TTTATTCTTCTTTGGTCAAAGTCCTGATGTAGGGCCTTGTTTTGGGAAAT
TTCCAATATGAATATGTGATAAACAGATAGGTAGGTAGTGATGGAGAGAC
AGATAAAAACCAAACAAACTTAAAATTCGACAAAAGAAAGATGAAGTCTT
CCTGGAGTAAATAGGTGATGGTTGACATTTCTTGATAGTTTTCCAGAAAA
ATGTCATGGCACATTTAAAGGAGCCTTTAAAGGCCTCCTCAGTTTGCAGA
GAGCAAAACAGCTTAGAAAAACACCCGTGTTCCAGGAAGTCTCAAGAGAC
TCTTATTCTTTATGAATGACAATGCTGCAATTTAGATACTCTGAGTTTAG
AGAGGCAATCTTTGATGATCAGGCCTTCCTAACATTGAGGTAGGCTCAAA
TCCCTGTGCCTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_f06.g1 MSMg01no297_f06.g1 CHROMAT_FILE:
MSMg01no297_f06.g1 PHD_FILE: MSMg01no297_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:45 2005
         (287 letters)



>mm_chr5_43153419_43154109
          Length = 691

 Score =  520 bits (269), Expect = e-152
 Identities = 284/291 (97%), Gaps = 4/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagccaaatactttgtgcctttattcttctttggtcaaagtcctgatgtagggccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agaagccaaatactttgtgcctttattcttctttggtcaaagtcctgatgtagggccttg 432

                                                                       
Query: 61  ttttgggaaatttccaatatgaatatgtgataaacagataggtaggtagtgatggagaga 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 431 ttttgggaaatttccaatatgaatatgtaataaacagataggtaggtagtgatggagaga 372

                                                                       
Query: 121 cagataaaaaccaaacaaacttaaaattcgacaaaagaaagatgaag----tcttcctgg 176
           || ||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 371 cacataaaaaccaaacaaacttaaaattcgacaaaagaaagatgaagtaaatcttcctgg 312

                                                                       
Query: 177 agtaaataggtgatggttgacatttcttgatagttttccagaaaaatgtcatggcacatt 236
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agtaaataggcgatggttgacatttcttgatagttttccagaaaaatgtcatggcacatt 252

                                                              
Query: 237 taaaggagcctttaaaggcctcctcagtttgcagagagcaaaacagcttag 287
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taaaggagcctttaaaggcctcctcagtttgcagagagcaaaacagcttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 691
Length adjustment: 9
Effective length of query: 278
Effective length of database: 682
Effective search space:   189596
Effective search space used:   189596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)