Query= MSMg01no297_o08.b1 MSMg01no297_o08.b1 CHROMAT_FILE:
MSMg01no297_o08.b1 PHD_FILE: MSMg01no297_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:26 2005
(595 letters)
>mm_chr5_38718954_38719948
Length = 995
Score = 1081 bits (559), Expect = 0.0
Identities = 586/595 (98%), Gaps = 1/595 (0%)
Strand = Plus / Plus
Query: 1 agggtgaagtttggaaagtgttatagggaacttgggtgagagacagaagtcagagctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtgaagtttggaaagtgttatagggaacttgggtgagagacagaagtcagagctgcc 260
Query: 61 atgtggcagggagttccggggtggggtagcattaagagtcactgtcttgtgtgtaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtggcagggagttccggggtggggtagcattaagagtcactgtcttgtgtgtaataaa 320
Query: 121 gctttgctgcagggaaggagaaggtaagaggggagctggtaagaacagtttgtgttccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttgctgcagggaaggagaaggtaagaggggagctggtaagaacagtttgtgttccag 380
Query: 181 gtgtaaagatacctccgagtttctgtcaagctctcagggtggtttccatcaaaggggact 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gtgtaaagatacctccgagtttctgtcaagctctcagcgtggtttccatcaaaggggact 440
Query: 241 ccttccagacatccattctggcatccctgacttctggccagagcatcaccaactgacatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttccagacatccattctggcatccctgacttctggccagagcatcaccaactgacatt 500
Query: 301 taggtctaaacacgtctggcacctctggcctcctgacacgatgaggctcaacaatacttc 360
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 501 taggtctaaacacgtctggcacctctggcctcctgacatgatgaggctcaagaatagttc 560
Query: 361 cggggaagggaagggcacctggaaaggggtaaagacagagaaagggggggagagagaaga 420
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 561 tggggaagggaagggcacctggaaaggggtaaagacagagaaagggggg-acagagaaga 619
Query: 421 acagaaataaagagaagagagagaagagaggaagaggctgaccaggaacatgagcaggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acagaaataaagagaagagagagaagagaggaagaggctgaccaggaacatgagcaggga 679
Query: 481 aagagagaataggagatagatagaattgaggcaacctagtattctctctagctgttgcta 540
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 680 aagagagaataggagatagatagaattgaggtaacccagtattctctctagctgttgcta 739
Query: 541 ggtagctgttgggcggagcctagcagaattgtctgtaagccaaaacatggagtga 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggtagctgttgggcggagcctagcagaattgtctgtaagccaaaacatggagtga 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_o08.g1 MSMg01no297_o08.g1 CHROMAT_FILE:
MSMg01no297_o08.g1 PHD_FILE: MSMg01no297_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:26 2005
(341 letters)
>mm_chr5_38923163_38923903
Length = 741
Score = 629 bits (325), Expect = 0.0
Identities = 337/341 (98%)
Strand = Plus / Minus
Query: 1 tgctttaccgtgtcatctctgcaaacccaggcttcccatcatgtgggcagggccagcaac 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgcttcaccgtgtcatctctgcaaacccaggcttcccatcatgtgggcagggccagcaac 482
Query: 61 tgactagtggttcctgttggcatgagtgacagaccctgctgaagaatgggccattcagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgactagtggttcctgttggcatgagtgacagaccctgctgaagaatgggccattcagga 422
Query: 121 tctccccgcccctccctgaaaagggagagtggattctgtgtcccagataatcagatgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctccccgcccctccctgaaaagggagagtggattctgtgtcccagataatcagatgttc 362
Query: 181 ctgccaaataattactacacgcagtctgggccagccacagggcacaaaacggaatgaatg 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgccaaataattactacactcagtctgggccagccacagggcacaaaacggaatgaatg 302
Query: 241 tactgcatgcagtgccctgggcagggctgctctccatggcagagccgccagcctttatca 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 301 tactgcatgcagtgccctgggcagggctgctctccatggcagagctgccagcctttatca 242
Query: 301 gcacctggcctggtggacagtgcatgaggacttagggcctt 341
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 241 gcaccgggcctggtggacagtgcatgaggacttagggcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
