CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTATGCTCTGTACCCCATTTTTAATGGGGTTATTTGAATTT
CTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCCT
ATCTTATTTAGGAGTAGTAAAAATCCTTTCCCAATCTGTTGATGACCTTT
TTGTCTTATTGACAGTGTCTTTTGCCTTACAGATGCTTTGCAATTTTATG
AGGCCCCACTTGTCCATTCTTGATCTACAGCACAAGTCATTGCTGTTCTG
TTTAGGATTTTCCCCCCTGTGCCCATATCTTCTAGGCTTTTCCCCACTTT
CTCCTCTATTAATTTCAGTGTCTCTGGTTTTATGTGGAAGTCTTTGATCC
ACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCTCATT
CTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTCGTTGAAAATGCT
GTCTTTTTTTTTCCCCCCCCACTGGATGATTTTAGCTCCCTGGTCAAAGA
TCAAGTGACCATAGATGTGTGGATTCATTTCTGGGTCTTCAATTCTATTC
CATTGGTCTACTTGTCTGTCACTGTACCGATACCATGCAGTTTTTATCAC
AATTGCTCTCTAGTACAGCTTAATTTCAGGCAGGGTGATTCCACCAGAAG
GTTTTTTTTTTTTTTTTTTAATTGTTGAAAATAGTTTTTGCTATCCTAGG
ATTTTATTATTN

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAACATCATACAATTGCCAAAAA
TATTTGTAGCTTGCAAAATCACTCCCCTGTTATAGGACTAGGCAAATCAT
AGTCAGATGCTCTAGACAGTAATCTGAAGCAACCCCACATCCCACCTCCA
ATTAAGATGAAGATATATTCCCAGAATATTGCTGTGTTTTTTCAAAGAAA
CCAAGATTTTCACTACAAGTATCAGCTTCAGCAGATCTCATGTCGTTGTC
ATAGCATTCTCTTAAAATATGTATTTCCTCCCCAATTGGCAGCATCAAAA
TATGTAACTAATAGGAAGTAAAGTCTCAACCTGATATTATTGGTGTCCTG
GTTGAAAAGAAATTTGCATGCAGAAATTCCCAATGGGTAGGGGAGGTTGG
GAACACCAGCAGATAACTGTCTATGTAGGAGCCAGAGAGTTCAGGAACTT
TGTTTCCTTTGTAGTTCTCAGCAGAAAACAGTGGGTTGACCTGGGAGACT
AGGTTCCCTGCCCAGGAACAGACATGCTGCATTTCTGTTGTCAATGCCAC
ATGGCACTTTGTTAAAACAGTTCTTGGAAAAAGACACTGTAACACATGCT
TGCATCCAGAAAACTACAACAGAGTCCAAGGTCTGTTGCACATTCAGGCC
TTGCTCTAGAGTCCTAAGGACTGGGATAGTAACAGGAAAGATCAATAGAA
AG

Query= MSMg01no298_f21.g1 MSMg01no298_f21.g1 CHROMAT_FILE:
MSMg01no298_f21.g1 PHD_FILE: MSMg01no298_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:02 2005
         (676 letters)



>mm_chr5_39924014_39925089
          Length = 1076

 Score = 1297 bits (671), Expect = 0.0
 Identities = 674/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacatcatacaattgccaaaaatatttgtagcttgcaaaatcactcccctgttatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacatcatacaattgccaaaaatatttgtagcttgcaaaatcactcccctgttatagg 260

                                                                       
Query: 61  actaggcaaatcatagtcagatgctctagacagtaatctgaagcaaccccacatcccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaggcaaatcatagtcagatgctctagacagtaatctgaagcaaccccacatcccacc 320

                                                                       
Query: 121 tccaattaagatgaagatatattcccagaatattgctgtgttttttcaaagaaaccaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaattaagatgaagatatattcccagaatattgctgtgttttttcaaagaaaccaaga 380

                                                                       
Query: 181 ttttcactacaagtatcagcttcagcagatctcatgtcgttgtcatagcattctcttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcactacaagtatcagcttcagcagatctcatgtcgttgtcatagcattctcttaaa 440

                                                                       
Query: 241 atatgtatttcctccccaattggcagcatcaaaatatgtaactaataggaagtaaagtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatgtatttcctccccaattggcagcatcaaaatatgtaactaataggaagtaaagtct 500

                                                                       
Query: 301 caacctgatattattggtgtcctggttgaaaagaaatttgcatgcagaaattcccaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacctgatattattggtgtcctggttgaaaagaaatttgcatgcagaaattcccaatgg 560

                                                                       
Query: 361 gtaggggaggttgggaacaccagcagataactgtctatgtaggagccagagagttcagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaggggaggttgggaacaccagcagataactgtctatgtaggagccagagagttcagga 620

                                                                       
Query: 421 actttgtttcctttgtagttctcagcagaaaacagtgggttgacctgggagactaggttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actttgtttcctttgtagttctcagcagaaaacagtgggttgacctgggagactaggttc 680

                                                                       
Query: 481 cctgcccaggaacagacatgctgcatttctgttgtcaatgccacatggcactttgttaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgcccaggaacagacatgctgcatttctgttgtcaatgccacatggcactttgttaaa 740

                                                                       
Query: 541 acagttcttggaaaaagacactgtaacacatgcttgcatccagaaaactacaacagagtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagttcttggaaaaagacactgtaacacatgcttgcatccagaaaactacaacagagtc 800

                                                                       
Query: 601 caaggtctgttgcacattcaggccttgctctagagtcctaaggactgggatagtaacagg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 caaggtctgttgcacattcaggccttgctctagagtcctaaggactgggatagtagcagg 860

                          
Query: 661 aaagatcaatagaaa 675
           |||||||||||||||
Sbjct: 861 aaagatcaatagaaa 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)