CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAGCCGCGGA
ATTCAACCCCTTTGCCACCTACCATGAAGTTCAATTCAGTTATTTATTTA
TTAAATGGTCATAGATTAAACCTACTTTACATTTGTCATTTCGAAAGTCT
ACAGCTCATTCTTATAGAATCATTCTATTTGGTACACACACACACACACA
CACACACACTCACACTCACATGTAATGATAGAGGGACTGATGCATGTCTG
CAATGCCAGCACTGGGAAGATGAAGGTAACCAGAGTAGACATTTAATACC
AACCTCAGTCACATACTGAGTTCAAGGCCAGCCAGGGTCACATGAGCCTC
AGTTTCAAAAAATTTAAAAAAAAAAATAATTTTTTTTCCTAAGAGCCAAG
TGTATTAGCTCATGCTTGTAATCCCATCACTTGGGAAGCAGAAGTAGTAG
ACTCTTAACCACTCCTAAATTGAGATCCACTTGGGCCACATGGTGAGAGG
TCCAGGTAACTGTGAGCTACACAGTGAGGCCTTGTCTTGATAAAGGGGAC
AGGGATAGGAGAGTAAGGCAGAAGGGGAACTGGGGAGGGATAACTAATAA
TAAGAATTTTTTTAAAGCCATATGGAAACTTGCTATCTCATAACCTCTTA
ATACTACGTATGCGTTCATTTAAATGATTTTAATTAAACTTACCCCACCC
AGGGGAAAATGCAGCTCCCAGAAGCCAAGGAA

AAAAAAAAAAAANNAAGAAAAAAACCAACAGGCCNCCTTGAGNNNNNNCG
CATGAATGGTAGGCGGGNGGNNGNCGGGTTCGAANCCGNNNGAANNANNG
AAGGTTGCCGGACCAGAGGGNAAAAANANNNGGNNNNGGGNNGNGGNNGN
NGNNGAGATTNNCCCGACAGCAACNANNNCNNANNGGNNAGANCNANNNA
AANGGNANANCNAANCNGGANNNAACNNNGGNAAGNAGAANCCACCAAGA
AAAAGGNCCNNNNNNNNNNNGAAAGAGANNNACAANNNGGGGGATTTTTT
GTTTTTGAAGTATGACCTAATGATTCTTTGGATTTCCTCAGTGTCTGTTG
GNANGNCCCGTTTTTTTTTTTGAAAAAGNAAACNNNGAAANNCNCNCNCG
GACNNNNAGCCACCCCGGCAAAAGNGGGGGGGANCAAGACNANACAAAGA
ACCAANNANNNGGNNACACAAGAACACAGAAANGNNCNANGNNNCNGAAN
AANAGANNNCAGCCCNNCAGAAGAAAAANACCAACAGNAAGCACCNCAAG
GAAGAGAACGCNACANNAAGAACAAGAGCNAACAGGGCAAGAAGAAAGNA
GGAGAGCGGAAGGCNCAAAGGAGGCACAAAGGGCGAGGAACNAACCACAA
GGCAACGCAGACAGAGGCGGCACGAAAGGAGGGGCAAGGAGAAAAAACAG
GGCAGTTTTATTAGAAAAAGGNCGGAAAGGGCAGAAAGAGCCGGACAGGA
CTCAATTGTATATAAGAAAAAGACTG

Query= MSMg01no298_m20.b1 MSMg01no298_m20.b1 CHROMAT_FILE:
MSMg01no298_m20.b1 PHD_FILE: MSMg01no298_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:33 2005
         (571 letters)



>mm_chr5_8225631_8226601
          Length = 971

 Score = 1065 bits (551), Expect = 0.0
 Identities = 565/571 (98%), Gaps = 5/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaagttcaattcagttatttatttattaaatggtcatagattaaacctactttacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaagttcaattcagttatttatttattaaatggtcatagattaaacctactttacat 260

                                                                       
Query: 61  ttgtcatttcgaaagtctacagctcattcttatagaatcattctatttggtacacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcatttcgaaagtctacagctcattcttatagaatcattctatttggtacacacaca 320

                                                                       
Query: 121 cacacacacacacacactcacactcacatgtaatgatagagggactgatgcatgtctgca 180
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacacacacacac--tcacactcacatgtaatgatagagggactgatgcatgtctgca 378

                                                                       
Query: 181 atgccagcactgggaagatgaaggtaaccagagtagacatttaataccaacctcagtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atgccagcactgggaagatgaaggtaaccagagtagacatttaataccaacctcagtcac 438

                                                                       
Query: 241 atactgagttcaaggccagccagggtcacatgagcctcagtttcaaaaaatttaaaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 439 atactgagttcaaggccagccagggtcacatgagcctcagtttcaaaaa-tttaaaaaaa 497

                                                                       
Query: 301 aaaataattttttttcctaagagccaagtgtattagctcatgcttgtaatcccatcactt 360
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aa--taattttttttcctaagagccaagtgtattagctcatgcttgtaatcccatcactt 555

                                                                       
Query: 361 gggaagcagaagtagtagactcttaaccactcctaaattgagatccacttgggccacatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gggaagcagaagtagtagactcttaaccactcctaaattgagatccacttgggccacatg 615

                                                                       
Query: 421 gtgagaggtccaggtaactgtgagctacacagtgaggccttgtcttgataaaggggacag 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgagaggtccaggttactgtgagctacacagtgaggccttgtcttgataaaggggacag 675

                                                                       
Query: 481 ggataggagagtaaggcagaaggggaactggggagggataactaataataagaatttttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggataggagagtaaggcagaaggggaactggggagggataactaataataagaatttttt 735

                                          
Query: 541 taaagccatatggaaacttgctatctcataa 571
           |||||||||||||||||||||||||||||||
Sbjct: 736 taaagccatatggaaacttgctatctcataa 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)