Query= MSMg01no298_n01.b1 MSMg01no298_n01.b1 CHROMAT_FILE:
MSMg01no298_n01.b1 PHD_FILE: MSMg01no298_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:34 2005
(686 letters)
>mm_chr5_18874903_18875988
Length = 1086
Score = 917 bits (474), Expect = 0.0
Identities = 480/482 (99%)
Strand = Plus / Minus
Query: 205 ttttataccctgggcatactttctgttcattctcaactccctgactatgtgtgcaatgtg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 ttttataccctgggcatactttctgttcattctcaactccctgactatgtgtgcaatgtg 1027
Query: 265 agctgttgccctctgatcctgctgccttgccttctatgctttcatagacttcatgccttc 324
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 agctgttgccctctgaccctgctgccttgccttctatgctttcatagacttcatgccttc 967
Query: 325 aagctaaaagccaaaatgagcctatcatcccttaaattcttgtcatatatttttcacagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 aagctaaaagccaaaatgagcctatcatcccttaaattcttgtcatatatttttcacagt 907
Query: 385 gatgatataaataactaataacctgatcaatactgaaattctaaaattcatgaatagtat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gatgatataaataactaataacctgatcaatactgaaattctaaaattcatgaatagtat 847
Query: 445 acccatagcattcctctgaataatgaatgaaccaaaccctgttaattaatttggatgcat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 acccatagcattcctctgaataatgaatgaaccaaaccctgttaattaatttggatgcat 787
Query: 505 cactgcacattaccgaaaaacaaggaaatatctgataagtgtttacaaatttttgacttg 564
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 cactgcacattactgaaaaacaaggaaatatctgataagtgtttacaaatttttgacttg 727
Query: 565 tactcaagctttaacctactgccttgatttgactttatttttgatataagtattagtatt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tactcaagctttaacctactgccttgatttgactttatttttgatataagtattagtatt 667
Query: 625 ttagttccacatatgggatgaattttgagtttgaagttatgcttaattgaatcctggatc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ttagttccacatatgggatgaattttgagtttgaagttatgcttaattgaatcctggatc 607
Query: 685 aa 686
||
Sbjct: 606 aa 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_n01.g1 MSMg01no298_n01.g1 CHROMAT_FILE:
MSMg01no298_n01.g1 PHD_FILE: MSMg01no298_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:34 2005
(664 letters)
>mm_chr5_18707345_18708413
Length = 1069
Score = 1081 bits (559), Expect = 0.0
Identities = 631/669 (94%), Gaps = 26/669 (3%)
Strand = Plus / Plus
Query: 3 attaaaataaatttgaaaaaggtatgcatgggggacgggcttggagggaggaaagggaaa 62
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 207 attaaaataaatttgaaaaaggtatgcatgggggaggggcttggagggaggaaagggaa- 265
Query: 63 agaaatccttttaaattaaattataatctcaaatatgttttaaaaagattgtatttatga 122
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 -gatat--ttttaaattaaattataatctcaaatatgttttaaaaagattgtatttatga 322
Query: 123 agaaatatgttattgaattgtttgataactatttctgatatcttttgattattgatattg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaaatatgttattgaattgtttgataactatttctgatatcttttgattattgatattg 382
Query: 183 aggcatagttgctaactctagaaactaaatgaattcta-----tcattaagctgttaagt 237
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 383 aggcatagttgctaactctagaaactaaatgcattctagctactcattaagctgttaagt 442
Query: 238 tttccactagttcacatttttctttctgcttagcaatctacaatgtataacatgcttttg 297
||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 443 tttccactagttcacat---------------gcaatctacaatgcataacatgcttttg 487
Query: 298 ttgttttaatcaatagaagaaaatatttgaaattttttctgggcttttttt--cacattg 355
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 488 ttgttttaatcaatagaagaaaatatttgacattttttctgggctttttttttcacattg 547
Query: 356 tttaacaatgttcacaattatataactatttaactttaagtatatgaggaatttaaatat 415
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 548 tttaacaatgttcacgattatataactatttaactttaagtatatgaggaagttaaacat 607
Query: 416 ctaaccctattttatataaaaagtaaatgtttagctcacctgtgtgcacacccacagatc 475
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 608 ctaaccctattttatataaaaagtaaatgtttagctcacctgtatgcacacccacagatc 667
Query: 476 tttcttaggttattatagggtagagagggtggtttagatgtataggttattgttataatt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttcttaggttattatagggtagagagggtggtttagatgtataggttattgttataatt 727
Query: 536 aaatatattatgttctgagtgatactctattaattttattaatagttatacaaaaatgtg 595
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 728 aaatatattctgttctgagtgatactctattaattttattaatagttatacaaaaatgcg 787
Query: 596 tttgcttctcccaggggttattgtgtttatttataacttccatttttattttttagcttt 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 788 tttgcttctcccaggggttattgtgtttatttataacttccatttttattttttagtttt 847
Query: 656 aattgattt 664
|||||||||
Sbjct: 848 aattgattt 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1069
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1059
Effective search space: 692586
Effective search space used: 692586
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
