Query= MSMg01no299_e17.b1 MSMg01no299_e17.b1 CHROMAT_FILE:
MSMg01no299_e17.b1 PHD_FILE: MSMg01no299_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:11 2005
(676 letters)
>mm_chr5_148780737_148781812
Length = 1076
Score = 1170 bits (605), Expect = 0.0
Identities = 661/693 (95%), Gaps = 21/693 (3%)
Strand = Plus / Minus
Query: 5 gaattcattgtctttccccttttaaataaatgacatcacttacaaaaacataaattaaaa 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 gaattcattgtcagtggccttttaaataaatgacatcacttacaaaaacataaattaaaa 1000
Query: 65 acagtggcagccctctttctgggagagagcaggacatgtaaggcattcagtggggtgact 124
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 999 acagtggcagccctttttctgggagagagcaggacatgtaaggcattcaatggggtgact 940
Query: 125 gcaaagcgaataataaatgaaagagaactgtatgtgaactca------------------ 166
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 939 gcaaagcgattaataaatgaaagagaactgtatgtgaactcaccctgacccctgacccct 880
Query: 167 ---ccctgacccctgacccctgacccctgacccctaacacaagcttccaggtcactggtc 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gacccctgacccctgacccctgacccctgacccctaacacaagcttccaggtcactggtc 820
Query: 224 acaatctggtctagcaggcaatccagctgtggaaacctagaaagaaaaagagacctgaaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 acaatctggtctagcaggcaatccagctgtggaaacctagaaagaaaaagagacctgaaa 760
Query: 284 acaccagagagccagcaaaacacacacaatagcatcgtgatgccacatcctgttggaatg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 acaccagagagccagcaaaacacacacaatagcatcgtgatgccacatcctgttggaatg 700
Query: 344 gggctcaggccatagagttcttggctccccgctgtaattacacaaacttcccattggtgt 403
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 699 gggctcaggccatagagttcttggctctatgctgtaattacacaaacttcccgttggtgt 640
Query: 404 catcccgtgagctcctacgggctaagtctaggatttgggagccacttaatcttattttct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 catcccgtgagctcctacgggctaagtctaggatttgggagccacttaatcttattttct 580
Query: 464 ggttaatcccctgtggattacatgtctgcgttcatcctctgtcttcatcccttgagtagt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggttaatcccctgtggattacatgtctgcgttcatcctctgtcttcatcccttgagtagt 520
Query: 524 taatgatcatgaaaacccccacagaaaggaaattattgaagaagttgacattcttttggg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taatgatcatgaaaacccccacagaaaggaaattattgaagaagttgacattcttttggg 460
Query: 584 ggagcatatgcctctaattcatgatgtctgctgtgtctattgtgtggctctttggtgttg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggagcatatgcctctaattcatgatgtctgctgtgtctattgtgtggctctttggtgttg 400
Query: 644 taaatactactacatgtaacctcttccgtatta 676
|||||||||||||||||||||||||||||||||
Sbjct: 399 taaatactactacatgtaacctcttccgtatta 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_e17.g1 MSMg01no299_e17.g1 CHROMAT_FILE:
MSMg01no299_e17.g1 PHD_FILE: MSMg01no299_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:11 2005
(560 letters)
>mm_chr5_148601958_148602917
Length = 960
Score = 1017 bits (526), Expect = 0.0
Identities = 550/558 (98%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacatagagccctgtctcaaaacaaacaaacaaacaaaaacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggctacatagagccctgtctcaaaacaaacaaacaaacaaaaacaaac 260
Query: 61 agcccaagaatcaaagtgagctggaagagagggcaaagcacaacaaatagaaaaaggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcccaagaatcaaagtgagctggaagagagggcaaagcacaacaaatagaaaaaggaaa 320
Query: 121 caatcgtgcagaaatagttaaaattgaacagaatacacaccaatatagcaaggttgacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 caatcgtgcagaaatagttaaaattgaacagaatacacaccaatatagctaggttgacaa 380
Query: 181 ctgtaccagaagacatgacctggctaaaatcagtaagaagacaaaacatggggttggaca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtaccagaagacatgacctggctaaaatcagtaagaagacaaaacatggggttggaca 440
Query: 241 aaatcaatatagtcagggtttatagcctaattattcctccattttcagtggtgggagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatcaatatagtcagggtttatagcctaattattcctccattttcagtggtgggagaaa 500
Query: 301 gtctacgaatcccaacaggaaccaactcaaagagcccacagtacccaagtgagcaaaggg 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gtctacgaatcccaacaggaaccaactcaaagagcccacagtaggcaagtgagcaaaggg 560
Query: 361 accagggataattccaaagagcacatggcattcaccgtgctggaatcagacccctgtgcg 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 accagggataattccaaagagcacatggcattcactgtgctggaatcagacccctgtgcg 620
Query: 421 ctgctgtaatggaaggctgcagactgggtactgtttaatcaacagtgtattgactccccc 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 ctgctgtaatggaaggctgcagactgggtactgtttaatcagcagtgtattgactccccc 680
Query: 481 cggaggctgggaaatccaaggtcaagacgatagtaactggtagagcagggtggggaagag 540
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 cggaggctgggaagtccaaggtcaagacgatagtaactggtagatcagggtggggaagag 740
Query: 541 gggaatcaagagagagca 558
||||||||||||||||||
Sbjct: 741 gggaatcaagagagagca 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
