BAC Information

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BAC

Clone NameMSMg01-299H19
Chromosome5 (Build37)
Map Location 149,416,542 - 149,416,830
singlet/doubletsinglet
Overlap genenone
Upstream geneFlt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
Downstream gene2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299H19.T7 (MSMg01no299_h19.b1)MSMg01-299H19.TJ (MSMg01no299_h19.g1)
ACCAG426245AG426246
length749762
length of high quality
(start - end)
292 (68 - 359)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no299_h19.b1 PHD_FILE: MSMg01no299_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:25 2005CHROMAT_FILE: MSMg01no299_h19.g1 PHD_FILE: MSMg01no299_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAACAAGTCTGGCCTAGATAGTGAGTCCCAGCCAGGGAAGCTAAGAG
CTAAACACTGAGACGGTGTCTCTAAATAAATGAAATTTTTGAAAGGTTAT
TTGCAGTGACAGGCATGGTAGTGTGTACATATAACCCCAGCATTCTGGAG
GCTGAGCCAGCAGGATCTCATGTTTGGTCTATACAGCAAGACTTTGAATG
AATGAATGAGTGAATGAGAATATACTAGCCATTTTATTTTGTGTCTGCCA
AAATCTTTTTCTCCCAGGACTGGTAAGATGGCTCAGCATTTAAGAGAGAC
TATTGTTCCTCTTTTATTATCCCCCCTCTCCAAGCAGCACCCATATCAGA
CGTCAACAACCGCTTGTAACCCAAGCTCCGAGGGATTCAACACTCTCTGG
CTTCTAGGGGTACCCACACACGTGACAAATATCCACACAGACACATCCAC
ATAAATAAAAGTAAACCTTTAGACTAGATATAAATGAAGAGCGTGAATGT
CCCTCTTCCACCCAACAGGCTTCTTGACCAGCCTACCCCTTTCCCTCAGT
ACAGCATCTTGCTCTCTCCTCACATAGAAACCCTAGCCAATCTTACTGGA
TGGATTGTTAAAATGTATCCAGGCAGTGGGCCAGGGGACACAGTCCCTAG
CATATGCTTTGCATGTGAGAGGCCCTGGTATTAATCCCCAGCACACCCC
CTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAAGCAGTAATTTGGTGAGGAAGATT
TTTAAGCCATGTGACTAGGACTTGGGCTTTGGAGCAGCTATTGCTGGCTG
CGTTTAGCTGGGCTTATGGAGCAAATGGCAGGGCAGAAGGATTCTGGGAA
AATGAGTTATTTCTCAATGAAGAAGCAAGCTTAAAACTGCAAAGAAGATG
TGGGTGGTGGGGTGAGTGAGAAATGTCCCCGCGGGGTCACACATTTGATC
ACTTGGTCCCCACTTGCTGATGCTGTGGGGAGACGGTGCAGGCTTGGAAT
TACATCACTGTGTTTTATTTTACCCACCTTCCCTCCTCTCCCTATTTTTA
GATCAGGATNTCTGCCCCCCGCTAGAAGAAAAGAAGAGATCTCGGGGGGG
CCTCCTCCTGCCACTGTGCCCAGCACCATGATGGATAATTTGTTATTCCC
CTGAACCCACAGCCAAAATAAACCTTCTTCTCCCACTGGCCTTTACTCAC
GGTGTTTCATCACCCCCCGCAGAAAACTACTGTGACTGTCACCTAGACCA
TTCCCATTAACCCTGATATCATGGTCGTGCTACGCTAAAGACATTGCCTC
TGCTGATACGCACCCCATATCTGCTCCTTGCATAATACATGATTGTGCAC
TCTCTTTTCTCCTCCCTGTCCCTCTTCCACCCCGCCCCTTTCCCCCTTAT
TCCCGGTCACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_h19.g1 MSMg01no299_h19.g1 CHROMAT_FILE:
MSMg01no299_h19.g1 PHD_FILE: MSMg01no299_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:26 2005
         (289 letters)



>mm_chr5_149416451_149417139
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagcagtaatttggtgaggaagatttttaagccatgtgactaggacttgggctttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaagcagtaatttggtgaggaagatttttaagccatgtgactaggacttgggctttgga 321

                                                                       
Query: 61  gcagctattgctggctgcgtttagctgggcttatggagcaaatggcagggcagaaggatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 gcagctattgctggctgcgtttagctgggcttatggagcaaatggcagggcagaagaatt 261

                                                                       
Query: 121 ctgggaaaatgagttatttctcaatgaagaagcaagcttaaaactgcaaagaagatgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgggaaaatgagttatttctcaatgaagaagcaagcttaaaactgcaaagaagatgtgg 201

                                                                       
Query: 181 gtggtggggtgagtgagaaatgtccccgcggggtcacacatttgatcacttggtccccac 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 gtggtggggtgagtgagaaatgtccccacggggtcacacatttgatcacttggtccccac 141

                                                            
Query: 241 ttgctgatgctgtggggagacggtgcaggcttggaattacatcactgtg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ttgctgatgctgtggggagacggtgcaggcttggaattacatcactgtg 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)