BAC Information

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BAC

Clone NameMSMg01-299J09
Chromosome5 (Build37)
Map Location 134,655,698 - 134,656,147
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16
Downstream geneGtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299J09.T7 (MSMg01no299_j09.b1)MSMg01-299J09.TJ (MSMg01no299_j09.g1)
ACCAG426316AG426317
length757755
length of high quality
(start - end)
457 (43 - 499)355 (68 - 422)
definitionCHROMAT_FILE: MSMg01no299_j09.b1 PHD_FILE: MSMg01no299_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:33 2005CHROMAT_FILE: MSMg01no299_j09.g1 PHD_FILE: MSMg01no299_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAACAACACTGCAAATTAAATACTAGCCCGGGCTACGTTAGACCCTGTT
TCAAAAACCACAAACATTTACTTCTGTTGGGCTCTGGCTAGAACTCAAGA
ACTTGCACATACTAGGTGATCATGTTATCACTGGGCCACACTCCCTGCTT
CTGACTACAATTGTAAATCTCATTCCGAGAATTCGACTGTTGTGTGCCTT
GTCACAAAACAAGAACCAAATTGATGGGCAAGCATCGCCACCTAGTGGCC
ATGATTCACACTGTAGATGTCCTCTTGGTTGCAATTTTCGAAGGGNTTTT
TTTTTTTTTTTAATTTTTATTTACACGCATGTGTGCATATCTGTATGAGT
GAATGCCACATGTGTTCAAGGGACCCTGAAGACAAGACGTCTACGTCAGA
ATCCCTGAGGCTGGAGTTGTTAGGTGGTTGTGAGTCACCTGATATGGGAC
CTGGGATCCAAATTTGAGTCCTATGCAAGAGCAGCAAGCACTCTTTATTT
TTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCTCTGGATGTCATTTGAA
GACAAGGCTGGCCCCGAACTCAGAAATCCGCCTGCCTCTGCCCTCCCAGT
GCTGAGATTAAAGGCGTGTGCCACCACACCCCAGTTTTTTGGGTACCTTT
ATCTTTCGAATTACGGATTCCATATGATCAGCAGACTGTTCCGTAACCAC
GAACGAA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTACATGGCTGGCTGCTTTCTTTCCTGCAGCTC
TTATGTCTGTCTAATCCCTCTGCTTCCCCGTCATGATGATTCCCCTCCTC
TTCCTCTCTCAGTTCCTTGCCCAAACAATCTAAAAGTCCAGCCTCTGTCT
TTCTGCCCAGCCATTGGCTTTATGGCAATTTTTTCTTATCAATGGACACC
AGCTAGGGGAAGGGACCCTCAGGTCTGGAAGAGTGGCTTTTGGGGAGCAA
AATAAGACAAAGCATTAGAACCAATTCCCAACATAGGTTGGCCAAAAATG
TGCTCTATAATCTTATGCACATACTGAGTCTTTGTTCCTCCTGACTCTAC
AATGGGATGATGGGGCCCTGTGCCATCAAAACAAGCTTCCCCTTACTTTG
TGACATGTAGAGGACATCCTGAGCTTTCTAAGTCTTCACCCTTTACCTCT
TCCCACAGAGAGGCAAGCATCACTCTCCTAATGGTGAGACAGAAGAAAGT
AAGGAGAAGGCTCAGAAGTTAAATAAGAGAAGTTGGCGTTTGGCAGAGGA
CCTGAATTTAGTTCCCAGAACCCCTGTGGGGTAGCTTACAACCACCTCTA
CCTCCAGCTCCAGAGCAGGGAAACCAATGTCACAGGGAGCTCAAGAGCCC
AGAGTTCAAGGCCATCATGAAGGCTGGCATCCATGCCCAAGTTGGAAAAG
CCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_j09.b1 MSMg01no299_j09.b1 CHROMAT_FILE:
MSMg01no299_j09.b1 PHD_FILE: MSMg01no299_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:33 2005
         (457 letters)



>mm_chr5_134655587_134656443
          Length = 857

 Score =  779 bits (403), Expect = 0.0
 Identities = 439/453 (96%), Gaps = 5/453 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   ttcaaacaacactgcaaattaaatactagcccgggctacgttagaccctgtttcaaaaac 66
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaaacaacacagcaaattaaatactagcccgggctacgttagaccctgtttcaaaaac 502

                                                                       
Query: 67  cacaaacatttacttctgttgggctctggctagaactcaagaacttgcacatactaggtg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaaacatttacttctgttgggctctggctagaactcaagaacttgcacatactaggtg 442

                                                                       
Query: 127 atcatgttatcactgggccacactccctgcttctgactacaattgtaaatctcattccga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 atcatgttatcactgggccacactccctgcttctgactacaattgtaaatctcattcgga 382

                                                                       
Query: 187 gaattcgactgttgtgtgccttgtcacaaaacaagaaccaaattgatgggcaagcatcgc 246
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattcgactgttgtgtcccttgtcacaaaacaagaaccaaattgatgggcaagcatcgc 322

                                                                       
Query: 247 cacctagtggccatgattcacactgtagatgtcctcttggttgcaattttcgaagggntt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 321 cacctagtggccatgattcacactgtagatgtcctcttggttgcaattttcgaagg---t 265

                                                                       
Query: 307 tttttttttttttaat--ttttatttacacgcatgtgtgcatatctgtatgagtgaatgc 364
           |||||||||||||||   ||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 264 tttttttttttttaaaacttttatttatatgcatgtgtgcatatctgtatgagtgaatgc 205

                                                                       
Query: 365 cacatgtgttcaagggaccctgaagacaagacgtctacgtcagaatccctgaggctggag 424
           |||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct: 204 cacatgtgttcaagggaccctggagacaagacgtctatgtcagaatccctgaagctggag 145

                                            
Query: 425 ttgttaggtggttgtgagtcacctgatatggga 457
           |||||||||||||||||||||||||||||||||
Sbjct: 144 ttgttaggtggttgtgagtcacctgatatggga 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)