Query= MSMg01no299_m01.b1 MSMg01no299_m01.b1 CHROMAT_FILE:
MSMg01no299_m01.b1 PHD_FILE: MSMg01no299_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:46 2005
(656 letters)
>mm_chr5_76340321_76341378
Length = 1058
Score = 1222 bits (632), Expect = 0.0
Identities = 651/660 (98%), Gaps = 6/660 (0%)
Strand = Plus / Plus
Query: 1 ccacaaagttcgcctttagatacctacatctccttttctgacataatccgggtctttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacaaagttcgcctttagatacctacatctccttttctgacataatccgggtctttata 260
Query: 61 aatgtcccgggccaagccgaagtcacagatcttaaccacattcttctccgataggagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtcccgggccaagccgaagtcacagatcttaaccacattcttctccgataggagaat 320
Query: 121 gtttcgtgctgccaggtccctgtggatacactgtgaaaagaagaatacgtgtggtaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gtttcgtgctgccaggtccctgtggatacactgtgaaaagaagaatacgtgtgataagtc 380
Query: 181 actacacagctaatctctttcacatctgttgtgacctcacacttaacaaaaaaaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actacacagctaatctctttcacatctgttgtgacctcacacttaacaaaaaaaaaaaaa 440
Query: 241 aaaagtcccacattggagaaccaagtgattaagaaggactagggttgcactttataccaa 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aa--gtcccacattggagaaccaagtgattaagaaggactagggttgcactttataccaa 498
Query: 301 ccctaagcgcctgtgtgtttcattgagacacacatctgcttattccataaacagtcttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccctaagcgcctgtgtgtttcattgagacacacatctgcttattccataaacagtcttgg 558
Query: 361 ccgttagagttaaatggcaaagttaca----gtctgatggtgaacacaatattaaaaaat 416
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 559 ccgttagagttaaatggcaaagttacatacagtctgatggtgaacacaatattaaaaaat 618
Query: 417 gtgtctccgatcacatacacacatcctttggcttgtgccctatctggcgaagacttggtt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 619 gtgtctccgatcacatacacacatcctttggcttgtgccctatctggcgaagactcggtt 678
Query: 477 agactaaggggatcccaggatagcctggtcttgaatagatgtataaaaatcaggagcaaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agactaaggggatcccaggatagcctggtcttgaatagatgtataaaaatcaggagcaaa 738
Query: 537 ggttctcattggtgtggtgtactttcttagccttctcttccatttggtatggaagcttgg 596
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggttctcattggtgtgatgtactttcttagccttctcttccatttggtatggaagcttgg 798
Query: 597 ctggatctggaggcagtacccactggtactcatcctacttccaaagtgttcaatattaca 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctggatctggaggcagtacccactggtactcatcctacttccaaagtgttcaatattaca 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1058
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1048
Effective search space: 677008
Effective search space used: 677008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_m01.g1 MSMg01no299_m01.g1 CHROMAT_FILE:
MSMg01no299_m01.g1 PHD_FILE: MSMg01no299_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:46 2005
(644 letters)
>mm_chr5_76560771_76561815
Length = 1045
Score = 1067 bits (552), Expect = 0.0
Identities = 584/596 (97%), Gaps = 4/596 (0%)
Strand = Plus / Minus
Query: 53 gcagcccaggcagaact---gggcaagcaatatcttggggttactgacagggaaaacaga 109
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 gcagcccaggcagacctggggggcaagcaatatcttggggttactgacagggaaaacaga 986
Query: 110 caaactactgtagagggctgatatcagatcagctctaatgttttaagacttattataaac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 caaactactgtagagggctgatatcagatcagctctaatgttttaagacttattataaac 926
Query: 170 ataaaggttttgtgtcttttatttgggaactacatggtctaaggtggggtagaaaccccc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ataaaggttttgtgtcttttatttgggaactacatggtctaaggtggggtagaaaccccc 866
Query: 230 aaataatatttactatatcaaatcacagctagctgaggggtctcttcctctacctgaatg 289
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aaataatatttactataacaaatcacagctagctgaggggtctcttcctctacctgaatg 806
Query: 290 tcattcatgggtaggcaagaagccc-ttttggttcagattactagcagctttcagtttcc 348
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 805 tcattcatgggtaggcaagaagccctttttggttcagattactagcagctttcagtttcc 746
Query: 349 ctcagggtctggcatcaaggactggtggcagtggacaagcagaaacagtggcaagtggcg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcagggtctggcatcaaggactggtggcagtggacaagcagaaacagtggcaagtggcg 686
Query: 409 ccctgtccaacagtctggtgtagaccctggctatggaggcccctgggcccttggcaacag 468
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 ccctgtccaacagtctggtgtagaccctggctatggaggcccctgggaccttggcaacag 626
Query: 469 cagtgttaaagttctcagcttggtgtctgagagccttggtcctgaagatttgacagcttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtgttaaagttctcagcttggtgtctgagagccttggtcctgaagatttgacagcttt 566
Query: 529 ctcatactcctctagcaaccacagagtacagactggttctcttctctggctccttgtggc 588
|||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct: 565 ctcatactcctctagcaatcacagagtacagacaggttttcttctctggctccttgtggc 506
Query: 589 cgtttatcaaccctcagctttcttgtctgcaccacttcacttttttgctgatgaaa 644
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgtttatcagcccttagctttcttgtctgcaccacttcacttttttgctgatgaaa 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space: 656190
Effective search space used: 656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
