BAC Information

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BAC

Clone NameMSMg01-299M10
Chromosome5 (Build37)
Map Location 77,873,475 - 77,873,621
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7
Downstream genePea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299M10.T7 (MSMg01no299_m10.b1)MSMg01-299M10.TJ (MSMg01no299_m10.g1)
ACCAG426456AG426457
length793817
length of high quality
(start - end)
---147 (129 - 275)
definitionCHROMAT_FILE: MSMg01no299_m10.b1 PHD_FILE: MSMg01no299_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:47 2005CHROMAT_FILE: MSMg01no299_m10.g1 PHD_FILE: MSMg01no299_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGGTGCTTTCGCTGCTCTCGGGATGTGCTTATCACAGTCTGCCCGAG
AGACGTGTAGATTTCCTTGGGAGTGTGGCTGACGAGGTGCGTGGGGGAAG
CTTTATAGTGGATGTTGAGGTCCGTTGTGAAATCCGTGGGGCTGTTGAAC
TATGAGAGAGCCGTTTCCTGTGATGCGATTCCGCCTCCTCTTTTTGTTGG
GACATGTAACTGATTGAGCGAATGATCGAGCGAGCTTGTGTTTTATACTC
TAAGTGAAGCGTCCCGCTTTTATTATTTTCTGATTTTAACTTGTTCTTTT
AGAACTTTTTTTATTCTTAGCATATCTTGCCTGTTATATGTTGCAAGAGG
CACCCTGATTGCTCCACACTGGGACCTTTGATGGTGGATTGTGAGACCAT
TTACACACTCCACTTGTGTTCACCAATGTGATCTGTTATGGCTTCCTTTA
GTGATGTGGGTCCGGTCCAAGCTCCCTTGTCTCTGATCTTGCTTGACCGG
TTGACTTGCACGCCTTTGTGCTGTAGTTGTCCACCTGCTCCCCACTACCC
TGTTCTTTCACTTACTCCTTCCTGTGGCAAGGACCGTCTCCCTAAGCTTC
TCCTTGTTGGCTACCTCCCCTCATTTCTTCTCTCACCTCAGGCTTCCTTC
TCCCGTTTTTCCCCCTACTCTCCTCCCCTCCCTCTTTCTCTCCGACCACC
CCTACCCCTCTCCCCCACTCCCCCTCGTCCCCCCTTCTTCTTC
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCACACAGACCTTGCGGCTTAGACC
TTTGGCATCATTCAGATCACTGGTCTGCAGGAGAGGGGACATAGATCAGT
TAGGTCATATACTCTAAATGACAATCTTTGTGCTGCTGATGGTGACTACA
GTTCCGCAGCCGGTATTTTTAACAGATATCTTCAGATAGACTGGATTTAC
TGCTGAAAAAGGTAGAGAGTACCTGTAAAGAGAGGAACAGGTGCATTAAA
GAACAAAAGCAGCTTAATGGCTTTGTTAAGGTTGCTATGGAAATGACTAA
ATGTGAATTTCTTGTTCTTTGCAGTTAACCATCTATACTGCTAGAGACAT
GGTCCTATACTTTCCCCCTACCGGGAGGCCAGGGGACACAACCTGAACAG
GGACTGTGTGTGTGTGCGCGTGCGTCCCCTCTCCCCTCTCCCTCTCCCTT
CCTCTCTCTTCTTCTCCCCCCCCCCCCTCCCCTCTTTCACATATTCCCCA
CTCTCTCTTTCATTTTCTTCCTCCTCTCCTCCCCCCCCCCCTCCCCCCCC
CTCCCCCTTTCTCCTCTCTCTCTTCCCTCTCCCCTTCTCCTCCCCCCCTC
CCCCCCTCTCCTTCCTCTTACCCCTCCTTTCTCCCCACCCTCCCCTCTTT
ACTCTCCTTTCCCTCTCCCATCATCTCCATATCATTCTCTTTCCAATCTC
ATTTTCCTCTTCCTCCTCTTCCTTTCTCTCCTCCTACCTCTTAGACACAC
CTACTCCACCTCATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_m10.g1 MSMg01no299_m10.g1 CHROMAT_FILE:
MSMg01no299_m10.g1 PHD_FILE: MSMg01no299_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:47 2005
         (147 letters)



>mm_chr5_77873275_77873821
          Length = 547

 Score =  284 bits (147), Expect = 1e-81
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagaggggacatagatcagttaggtcatatactctaaatgacaatctttgtgctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aggagaggggacatagatcagttaggtcatatactctaaatgacaatctttgtgctgctg 288

                                                                       
Query: 61  atggtgactacagttccgcagccggtatttttaacagatatcttcagatagactggattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atggtgactacagttccgcagccggtatttttaacagatatcttcagatagactggattt 228

                                      
Query: 121 actgctgaaaaaggtagagagtacctg 147
           |||||||||||||||||||||||||||
Sbjct: 227 actgctgaaaaaggtagagagtacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)