Query= MSMg01no300_c20.b1 MSMg01no300_c20.b1 CHROMAT_FILE:
MSMg01no300_c20.b1 PHD_FILE: MSMg01no300_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:17 2005
(229 letters)
>mm_chr5_16185695_16186323
Length = 629
Score = 371 bits (192), Expect = e-107
Identities = 219/235 (93%), Gaps = 12/235 (5%)
Strand = Plus / Plus
Query: 1 ccctcttagccgcaggnaaggnanatgaccaggaggacacaaggggagatagaaagggtc 60
|||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccctcttagccgcaggcaaggtatatgaccaggaggacacaaggggagat-gaaagggtc 259
Query: 61 actccaaggagaagagggcaaggaaagggtgtcagacccaggaggatatagtcaagatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actccaaggagaagagggcaaggaaagggtgtcagacccaggaggatatagtcaagatac 319
Query: 121 taggggatgtgaggaagttccaggaagtaactgagagaagccatgagaaaaccagagggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taggggatgtgaggaagttccaggaagtaactgagagaagccatgagaaaaccagagggg 379
Query: 181 agggggataaatgtctctgttttttaa------ttttaatttcagatgtactgtg 229
||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 380 agggggataaatgtcactgt-----aacacaaattttaatttcagatgtactgtg 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no300_c20.g1 MSMg01no300_c20.g1 CHROMAT_FILE:
MSMg01no300_c20.g1 PHD_FILE: MSMg01no300_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:17 2005
(284 letters)
>mm_chr5_16359245_16359928
Length = 684
Score = 509 bits (263), Expect = e-148
Identities = 280/289 (96%), Gaps = 6/289 (2%)
Strand = Plus / Minus
Query: 1 catgggtttgctgtgtgtgtatgcgtgtgtgcttatgtttgtgtgttcgtatatttgtgc 60
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 613 catgggtttgctgtgtgtgtatgtgtgtgtgcttatgtttgtgtgtttgtatatttgtgc 554
Query: 61 ctgtgtttgagtttgt------gcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgc 114
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctgtgtttgagtttgtgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgc 494
Query: 115 gtgtgtgtgtacgttttgtttttgtcttattgttcttttcttttggttgtgatatcagtt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtgtgtgtgtacgttttgtttttgtcttattgttcttttcttttggttgtgatatcagtt 434
Query: 175 ttagtgggttttttgaggttgttgagagagagagagagagggataggagtaaattgtgat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttagtgggttttttgaggttgttgagagagagagagagagggataggagtaaattgtgat 374
Query: 235 aacagtactatgttaaaagctaaacataaaatagttttaaaatgaagga 283
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 373 aacagtactatgtgaaaagctaaacataaaatagttttaaaatgaagga 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
