Query= MSMg01no300_h01.b1 MSMg01no300_h01.b1 CHROMAT_FILE:
MSMg01no300_h01.b1 PHD_FILE: MSMg01no300_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:35 2005
(297 letters)
>mm_chr5_129597430_129598126
Length = 697
Score = 563 bits (291), Expect = e-165
Identities = 294/295 (99%)
Strand = Plus / Plus
Query: 1 gcccatgttcagggtgggtcttcatagctacacctctctgaatgccccccatagtcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcccatgttcagggtgggtcttcatagctacacctctctgaatgccccccatagtcacat 260
Query: 61 ccagaggtgtgtctcctaggcaacctaagacccaatcaacttgacaatgaagactaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaggtgtgtctcctaggcaacctaagacccaatcaacttgacaatgaagactaatca 320
Query: 121 ttataggtagagtgacctttattccctttggggaggttgctgagggatgacaccaagggt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacaggtagagtgacctttattccctttggggaggttgctgagggatgacaccaagggt 380
Query: 181 cctgtgcacgtagcacaatcagtttacagctgagctccacatacatcctggccctggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtgcacgtagcacaatcagtttacagctgagctccacatacatcctggccctggaaa 440
Query: 241 cagctgtctgtgtgagcatctctctctctctctctctctctctctctctctctct 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagctgtctgtgtgagcatctctctctctctctctctctctctctctctctctct 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_h01.g1 MSMg01no300_h01.g1 CHROMAT_FILE:
MSMg01no300_h01.g1 PHD_FILE: MSMg01no300_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:35 2005
(196 letters)
>mm_chr5_129763943_129764540
Length = 598
Score = 340 bits (176), Expect = 3e-98
Identities = 192/198 (96%), Gaps = 2/198 (1%)
Strand = Plus / Minus
Query: 1 ttggaagccagggttcagtgtaatcctgctgaaagccagaataggtcctaagctgtcatt 60
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttggaagccagggtttagtgcaatcctgctgaaagccagaataggtcctaagctgtcatt 339
Query: 61 gcttatgtatctgataataccccagggggtaactgcccaggcagttcggcaggaaaaaga 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gcttatgtatccgataataccccagggggtaactgcccaggcagttcggcaggaaaaaga 279
Query: 121 tggacacattgattcaggagcatccggaattcaggttccagaagaaatgc--agactaca 178
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 278 tggacacattgattcaggagcatccggaattcaggttccagaagaaatgcagagactata 219
Query: 179 cacaacattaagaaataa 196
||||||||||||||||||
Sbjct: 218 cacaacattaagaaataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 598
Length adjustment: 8
Effective length of query: 188
Effective length of database: 590
Effective search space: 110920
Effective search space used: 110920
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
