Query= MSMg01no300_i14.b1 MSMg01no300_i14.b1 CHROMAT_FILE:
MSMg01no300_i14.b1 PHD_FILE: MSMg01no300_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:42 2005
(310 letters)
>mm_chr5_3357683_3358394
Length = 712
Score = 542 bits (280), Expect = e-158
Identities = 302/312 (96%), Gaps = 8/312 (2%)
Strand = Plus / Minus
Query: 5 gaattccagatctg--cccccccccaacagtgctaaaattgaaggcttacatcactaaac 62
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaattccagatctgcccccccccccaacagtgctaaaattgaaggcttacatcactaaac 253
Query: 63 ctggtgttcattacatagttgttgtttta--agtagtagtatttttattgcacacacaca 120
||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 252 ctggtgttcattatatagttgttg--ttagtagtagtagtatttttattgcacacacaca 195
Query: 121 t--acacacacacgcacacgcacacacaagagtttagcctacatatatgcatatgcagca 178
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tacacacacacacgcacacgcacacacaagagtttagcctacatatatgcatatgcagca 135
Query: 179 tatgaatgccaaaatggttgtgacttggaattgaacttaggttctctggaagagtagcca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tatgaatgccaaaatggttgtgacttggaattgaacttaggttctctggaagagtagcca 75
Query: 239 gtgttctcaaccacttgcacaatcgtctctccggccctattacataatttttgaaaaata 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gtgttctcaaccacttgcacaatcgtctctccggccctattacataatttttgaaaaata 15
Query: 299 aaatctggacgt 310
|| |||||||||
Sbjct: 14 aattctggacgt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 712
Length adjustment: 9
Effective length of query: 301
Effective length of database: 703
Effective search space: 211603
Effective search space used: 211603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_i14.g1 MSMg01no300_i14.g1 CHROMAT_FILE:
MSMg01no300_i14.g1 PHD_FILE: MSMg01no300_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:43 2005
(347 letters)
>mm_chr5_3230090_3230836
Length = 747
Score = 663 bits (343), Expect = 0.0
Identities = 346/347 (99%)
Strand = Plus / Plus
Query: 1 acacttcaaactgcaagtgataaaaatctgtcatctgcaagctacttattctaaggaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacttcaaactgcaagtgataaaaatctgtcatctgcaagctacttattctaaggaatt 260
Query: 61 cttttacagtaactcaaagagaccaaggggctttgttccactctattcagtcactgacat 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttacagtaactcaaagagaccgaggggctttgttccactctattcagtcactgacat 320
Query: 121 gaggcactcagctctgatcacatgaacagattcagagatgagggagaactcaattgagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcactcagctctgatcacatgaacagattcagagatgagggagaactcaattgagat 380
Query: 181 gctgttaagaacattgggaacagacgatctgagtttaggaaaatccgactacttaaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgttaagaacattgggaacagacgatctgagtttaggaaaatccgactacttaaggaa 440
Query: 241 gaagccaatgtagagaaagaataaattaagaaagaaacagagaaagggaaacaatccaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagccaatgtagagaaagaataaattaagaaagaaacagagaaagggaaacaatccaga 500
Query: 301 tgaccacaatttcaattctaagttttctgtgtttgtgtttccaggaa 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaccacaatttcaattctaagttttctgtgtttgtgtttccaggaa 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space: 249444
Effective search space used: 249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
