BAC Information

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BAC

Clone NameMSMg01-301D10
Chromosome5 (Build37)
Map Location 108,520,183 - 108,520,859
singlet/doubletsinglet
Overlap geneMtf2
Upstream geneTgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566
Downstream geneTmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301D10.T7 (MSMg01no301_d10.b1)MSMg01-301D10.TJ (MSMg01no301_d10.g1)
ACCAG427477AG427478
length743739
length of high quality
(start - end)		676 (41 - 716)669 (71 - 739)
definitionCHROMAT_FILE: MSMg01no301_d10.b1 PHD_FILE: MSMg01no301_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:33 2005CHROMAT_FILE: MSMg01no301_d10.g1 PHD_FILE: MSMg01no301_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGCCATGCTCGCAAATTACAGATTGCTCCAGTAAAAACTACAATGGGGAG
ATTCACTTAGTTATTTGGGTTATAAAATCAGTTGACAAAATATTCAACCA
CAAAAGGTATAGATCCATAGGGACCAATGCAAACTCTTAACAATTTTCAA
AAATTAATAGGAGATATTAAATGATTGAGGTGTACAGTTGGATTAAGTAC
ATAAGAATTAAGTAATTTGTTTCAAGCATTACAAGGAGATTCAAATTTGA
ACAGTCCAAGATGCCTAACAACTGAAGCAGAAAAAGAGTTAACTCCGGTA
GAACAAAGACTACAAGAGGCATATGTGGATAGAATCAATCCTAAACTTGA
TAATAAACTGCTCATTTTGCCTTCAACTCCTTTTTCTGTTGGGCTCATTA
TGCAAAGAGAAGATAGTATTAAGGAATGGATTTTCTTTGCTCATAAACAA
AGTAAAAAATTGAAGACATATATAGAAAAGATTTCTGAATTAATTATAAG
AAGTAGAATAAGATTACATCAAATGTCAGGAACAAAGCTGGCTGAAATTG
TAGTGACTCTTACAAATGCTGAGATTATATCATCATGGGTGATCAATGAA
GATTGGCAAGAGTTTGTAGCAACTACTTGGGTGAGATTAATAGTAAATAT
CTTAAAAGCTATACAGTTTATTAAAAGAACTAAATGGATTTTT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAGCCAACCTCAAAATGAGACTCAGAGAA
AATGCAAAGACGCCCAAGCATGTAGCTCAGCTGTAAGAAGAGTACCTGTC
TAGCAGTCTTGAAGCCATGGATTTGGTCCTCAGCACCTTATGAACTGGGT
GAAGTGGTAATTAATCTCAGTACTAGGGAGGTTAAGGCCCCTAGTTTTGA
GGTTATTTTCAGTTTGAGGCTGGCCTGTGGTATGTGAGACTCCCATTTCA
AAAACAACAACCAGGCTGGTGAGATGGTTCAGTGGGTAAGAGCACCCGAC
TGCTCTTCTCTAAGGTTCACAGCTCAAATCCCAGCAACCACATGGAGCCG
TAACGAGATCTAGCTCCCTCTTCTGGAGTGTCTGAAGACAGCTATAGTGT
ACTTACATATAATAAATAAATGAATTAAAAAAAAAAAAACAACCACCAAA
ATAAAAAGTGCTATATAGGTGTGTAGCTCATTGTTAATAGTGTATAAAAC
AACCTGAATTAGACCTCACTACAAAAAGCAAAAACCCCTGAATCTTGTGA
TTTGAGATCAGAGACATTATTAACTTGAAATAGTAATTAAGCTTAAAGAG
CATGTAAATTTCCATAATAGAAGAGGAAGGATGAAATAATTGACATTACC
AACCTTTTTGGGAAAAAATTAATACTAATATTAGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_d10.g1 MSMg01no301_d10.g1 CHROMAT_FILE:
MSMg01no301_d10.g1 PHD_FILE: MSMg01no301_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:33 2005
         (669 letters)



>mm_chr5_108519991_108521059
          Length = 1069

 Score = 1214 bits (628), Expect = 0.0
 Identities = 662/678 (97%), Gaps = 10/678 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagccaacctcaaaatgagactcagagaaaatgcaaagacgcccaagcatgtagctcag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 193 aaagccaacctcaaaatgagactcagagaaaatgcaaagacgcccaaggatgtagctcag 252

                                                                       
Query: 61  ctgtaagaagagtacctgtctagcagtcttgaagccatggatttggtcctcagcacctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctgtaagaagagtacctgtctagcagtcttgaagccatggatttggtcctcagcacctta 312

                                                                       
Query: 121 tgaactgggtgaagtggtaattaatctcagtactagggaggttaaggcccctagttttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgaactgggtgaagtggtaattaatctcagtactagggaggttaaggcccctagttttga 372

                                                                       
Query: 181 ggttattttcagtttgaggctggcctgtggtatgtgagactcccatttcaaaaacaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggttattttcagtttgaggctggcctgtggtatgtgagactcccatttcaaaaacaacaa 432

                                                                       
Query: 241 ccaggctggtgagatggttcagtgggtaagagcacccgactgctcttctctaaggttcac 300
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| 
Sbjct: 433 ccaggctggtgagatggttcagtgggtaagagcacccgactgctcttc-caaaggttcag 491

                                                                       
Query: 301 agctcaaatcccagcaaccacatggagccgtaacgagatctagctccctcttctggagtg 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agttcaaatcccagcaaccacatggagccgtaacgagatctagctccctcttctggagtg 551

                                                                       
Query: 361 tctgaagacagctatagtgtacttacatataataaataaatgaatta------aaaaaaa 414
           |||||||||||||||||||||||||||||||||||||||||||||||      |||||||
Sbjct: 552 tctgaagacagctatagtgtacttacatataataaataaatgaattagaaaaaaaaaaaa 611

                                                                       
Query: 415 aaaaacaac---caccaaaataaaaagtgctatataggtgtgtagctcattgttaatagt 471
           |||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 612 aaaaacaacaaccaccaaaataaaaagtgctatataggtgtggagctcattgttaatagt 671

                                                                       
Query: 472 gtataaaacaacctgaattagacctcactacaaaaagcaaaaacccctgaatcttgtgat 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtataaaacaacctgaattagacctcactacaaaaagcaaaaacccctgaatcttgtgat 731

                                                                       
Query: 532 ttgagatcagagacattattaacttgaaatagtaattaagcttaaagagcatgtaaattt 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ttgagatcagagacattattaacttgaaatagtaattaagcttaaagagcatgtaaattt 791

                                                                       
Query: 592 ccataatagaagaggaaggatgaaataattgacattaccaacctttttgggaaaaaatta 651
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 792 ccataatagaagaggaaggatgaaataattgacattacaaacctttttgggaaaaaatta 851

                             
Query: 652 atactaatattagtattt 669
           ||||||||||||||||||
Sbjct: 852 atactaatattagtattt 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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