BAC Information

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BAC

Clone NameMSMg01-301I13
Chromosome5 (Build37)
Map Location 131,233,629 - 131,233,918
singlet/doubletsinglet
Overlap geneCaln1
Upstream geneGbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301I13.T7 (MSMg01no301_i13.b1)MSMg01-301I13.TJ (MSMg01no301_i13.g1)
ACCAG427705AG427706
length744749
length of high quality
(start - end)
290 (64 - 353)620 (65 - 684)
definitionCHROMAT_FILE: MSMg01no301_i13.b1 PHD_FILE: MSMg01no301_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:57 2005CHROMAT_FILE: MSMg01no301_i13.g1 PHD_FILE: MSMg01no301_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCAGCAGATGCGCGGAATTCCAGGTA
ATTTTCTCAAAAAGAGCACAAGGCATTTTTAATTACGATGCCATTTCTAT
AGCTCCTGTCTTCTCATTTTCTAGGCCATTGATGCACATGCAGACTATTG
GTTCATTATTTCAGTGTCAATATTCTAAAATAAGCTGCCCACCCCATCTA
CGAGATTCTATTTTCTAAAAACTAATTACTCGTTGACAATCACGGTCTGA
AAATACTATTCATCTTGAGTTTCTTGAAGAAGGAGACATCTGCGTAACTA
TGATTATGATATATTATTGTAGTTATTTTGCTTTATTGTTGCTAATTTCA
GTGCTTGTTTTCTACCCCCCCCGCTATGGCTACAATAAACATCATAACCG
AGAAATGGATTTATTTCATTTAACATACTTAACAGTTTATCATCAGGGAA
GCTGAGGCAGGAACTCAAGCAGGGTAGGAGCCTAGAGTCAGGAACTGGAG
CAGAGAACGTGGAAGAATGTTGATTTCTGGCTTGTTCTCCATGAACAAGC
CTTTTTAGATAACCCTGAGCCATCTGCCCAGTGGTGACACCGCCTATAGT
GGGATGGGTCCTTCCAAGTCAATCATTAACCAAATACTACAACAGGTCAT
TCTGATAAAGACATCTTCTTAATTAGGGTTTCCTCTTCCCAAATGATTCT
AGTCTGTAGTACGTTGATCAAAAACTAGCCAGCACACCTGACCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGATTTGATTCAATAATTTTAGGAAGAAAGTTTTT
AGAGCTGGTCTTAGTTGCTTTGCTAGAAAGATGTAATGAAGTTGGAATCA
AGAATAGAATGTGCTCACTCCTCGTATAGTAAGTAAAGGCTGCATAGTAA
GAAATCCAATGAGCTTTCATAATCACACTAAAAAGAGAAATAGAAATAGA
CTTGGGACACATTTGTATCCAAGGGAAAACATTTAAGTCCAAGGATAAAG
ACACAGGTGTGCACTATAATAAGACAAGGCCATATAAAAACTGTTGCCTA
ACTTATAATGAGCATATTTGAATGAAACACTGCTTTGAACTTAATACCAA
CCAACATCCTTCTGAAACTCTCATTTTATGTAACATTTTATCTATGAGGT
AATTTTCTAAAGAACTTTTTGTCTAAGAAGATATAAAAAGGCCAGAGAAA
AGAAATAAAGTTGTTGGTTGAATGGTTTGGCTTGGGGACCTCTTGCCCCA
TCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATC
CATCCATGCATCCATCCATCTATCCATCCATCCATCCATCCATCCACTCA
TCCATCCATCCATGCATCCATCCATCCATCCATCCATCCATGCATCCATC
CATCTATCTATCCATCCAAATGTATTTGCCTGTATGTATGTACATGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_i13.b1 MSMg01no301_i13.b1 CHROMAT_FILE:
MSMg01no301_i13.b1 PHD_FILE: MSMg01no301_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:57 2005
         (290 letters)



>mm_chr5_131233429_131234118
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcacaaggcatttttaattacgatgccatttctatagctcctgtcttctcattttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gagcacaaggcatttttaattacgatgccatttctatagctcctgtcttctgattttcta 260

                                                                       
Query: 61  ggccattgatgcacatgcagactattggttcattatttcagtgtcaatattctaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccattgatgcacatgcagactattggttcattatttcagtgtcaatattctaaaataa 320

                                                                       
Query: 121 gctgcccaccccatctacgagattctattttctaaaaactaattactcgttgacaatcac 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctacccaccccatctacgagattctattttctaaaaactaattactcgttgacaatcac 380

                                                                       
Query: 181 ggtctgaaaatactattcatcttgagtttcttgaagaaggagacatctgcgtaactatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtctgaaaatactattcatcttgagtttcttgaagaaggagacatctgcgtaactatga 440

                                                             
Query: 241 ttatgatatattattgtagttattttgctttattgttgctaatttcagtg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatgatatattattgtagttattttgctttattgttgctaatttcagtg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)