Query= MSMg01no301_j13.b1 MSMg01no301_j13.b1 CHROMAT_FILE:
MSMg01no301_j13.b1 PHD_FILE: MSMg01no301_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:02 2005
(321 letters)
>mm_chr5_85511348_85512069
Length = 722
Score = 445 bits (230), Expect = e-129
Identities = 295/318 (92%), Gaps = 5/318 (1%)
Strand = Plus / Plus
Query: 5 gaattccactactctgatcatcacacaggcaggagttaatgtcaccttttgcgtttacaa 64
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 205 gaattccactactctgatcatcacacaggcaagagttaatgtcaccttgtgcgtttacaa 264
Query: 65 ataatttctttatttgtttagtataaagaaaggtccattgtattttatattgatcttatc 124
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 ataacttctttatttgtttagtataaagaaaggtctattgtattttatattgatcttatc 324
Query: 125 agtaataagacattttagaaacattgtctgcttgtgcatatatagatattttt-ctcttt 183
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 agtaataagacatttgagaaacattgtctgcttgtgcatatatagatattttttctcttt 384
Query: 184 ctctatgttttgtttttgactgcaactatgtttgaaagtgatgtcttgtagctgaaaatt 243
||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 385 ctccatgttttctttttgactgcaaccatgtttgaaagtgatgtcttgtatctgaaaatt 444
Query: 244 tagctacacatctttggctccccatttg--tcccacagaagcactcgcccaggagctacc 301
||||| |||| ||||||||||||| | || ||||| ||||||| |||||||||||||
Sbjct: 445 tagctgcacagatttggctccccat--gcatcgcacaggagcactcacccaggagctacc 502
Query: 302 cctaacaaggtgtaactg 319
|| | |||||| ||||||
Sbjct: 503 ccgagcaaggtctaactg 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space: 222456
Effective search space used: 222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_j13.g1 MSMg01no301_j13.g1 CHROMAT_FILE:
MSMg01no301_j13.g1 PHD_FILE: MSMg01no301_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:02 2005
(649 letters)
>mm_chr5_85689440_85690487
Length = 1048
Score = 1033 bits (534), Expect = 0.0
Identities = 570/584 (97%), Gaps = 5/584 (0%)
Strand = Plus / Minus
Query: 1 caaatcccaactgatacattctgcagcacagcttctattccaaagacccagccaaagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 579 caaatcccaactgatacattctgcagcacagcttctattccaaagacccag-gaaagtct 521
Query: 61 tggatgaaagggctgaaaaactgtaaaacactgatctccccactgccagggtgtctgctg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgggtgaaagggctgaaaaactgtaaaacactgatctccccactgccagggtgtctgctg 461
Query: 121 ctagatggtgacaggacaatgaaaaatgtatctttgaacttgcagcaatacacttgcttt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctagatggtgacatgacaatgaaaaatgtatctttgaacttgcagcaatacacttgcttt 401
Query: 181 aacaaggactgtgtaatgacaataccagttgacatctaggtggaatgagaatttcacatg 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aacaaggactatgtaatgacaataccagttgacatctaggtggaatgagaatttcacatg 341
Query: 241 gtcccaaatgtagatgaagggacatagttggtcagtgcatactggaagataaagtattag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtcccaaatgtagatgaagggacatagttggtcagtgcatactggaagataaagtattag 281
Query: 301 tttttaccatatcacacatagattgttcaatctcaaatagtcatccctggtcatacaaac 360
||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tttttaccaaatcacaaataggttgttcaatctcaaatagtcatccctggtcatacaaac 221
Query: 361 atataagcaacactaaacagtttatatatatatatatttaagagatgagttgaagggaac 420
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 220 atataagcaacactaaacagtt----tatatatatatttaagagatgagttgaagggaac 165
Query: 421 agaagtgggagtcagatagctgcagtactcatgtataaatttcatatttttttttctttt 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 164 agaagtgggagtcagatagctgcagtactcatgtataaatttcatatatttttttctttt 105
Query: 481 tcttaagatttattatgtagtgttctgcctgcattatgcccgcagatcagaagaggcacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tcttaagatttattatgtagtgttctgcctgcattatgcccgcagatcagaagaggcacc 45
Query: 541 agatctcactctagatgattgtgagccaccaagtggtagctgag 584
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 44 agatctcactctagatgattgtgagccaccatgtggtagctgag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1048
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1038
Effective search space: 663282
Effective search space used: 663282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
