XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCCAG
AAGGTTTTTCTGTTCATAAAATGCAAATGCTATATAGTTCTCCTAAGGAA
TTAAGTGATGGAAACATAATTTATAAAAACAGATATGAATTAATAAATTT
TGTGTATAATTGTAGCATACAAGAGCCCATTATCGTGCATTAGTGCAGGC
TTCTAATAAAATTTTCAAAGAGTTCTGCTACTAATTTTAAGAGAACATAT
ATGTCATCTTATGATTGAAAGTTTATTTTCTATTATTATATGGAGTTGTA
ATTGTCATTGTGATGCACACCTTTAATCCCACCACTTGGGAGGCAGAGGC
AGGTGGATTTCTGAGTTCAAAGCCAGCTTGCTCTATAGAGTAAGTTCCAG
GACAGCCAGGGCTCTCCAGAGAAACCCTTTTTCGAAAAACCAAAATGAAT
TCAGGCCAATTTTCTCTTTTTTTCTTCTTTGCTAGCATGCCCACCCATCC
CACTGTGTCATAGCATGTAAGTCTCTGCCAAATGTCTGTCCTGATATCAT
AGACTATGATTTCCAACATTCAGAACATGAGTCAAACACATTTCTATTGT
GTATAAATGACCCTGTCTGTAATATTTTACATTACAATGTTAAAAGAGAA
TAATTCAAGATATCCATTCAACATTTGGGATTTTCTCTTTGACACCAAAC
TTTAATTTTGGAACATACAAGAAGCCTGAGTTTCTACTACTCATTAGAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTCGCACCTGCGTACAAGGCTTGTTTAC
TAGTTAGGCACAGCTTAGGCCCGCGCCATCTTATAATGGCGATTGCTCGC
GGCACACACGGCTCTCCTCAGAGATTACTGGCGGCACACATGCGATTGCT
CACAGCACGTACCGGTTCTCCACACATTCACATGGAAACTGAACAACACA
CTTCTCAATGATACCTTGGTCGAGGAAGGAATAAAGAAAGAAATTAAAGA
CTTTTTAGTGTTTAATGAAAATGAAGCCACAACATACACAAAATTATGGG
ACACAATGAAAGCTTTTCTAAGAGGGAAACTCATAGCTCTAAGTGCCTCC
AAAAAGAAACTAGAGACAGCACACATTAGCAGCTTAACAACACACCTAAA
AGCTCTAGAACAAAAGGAAGCAAATTCACCCAAGAGGAGTAGATGGCAGG
AAATAATCAAACAGAGGGGCGAAATCAACCAAGTAGAAACAAGAAGAACT
ATTCAAAGAATCAACCAAAAGAGAAGCTGGCTCTTTGAGAAAAATGAACA
AGATAGATAAACCCTTAGCCAGACTCACTGGAGGGCACATGGACAGCATC
CTAATTAACAAAATGAGAAATGAAAAGGGAAACATAACAACAGATCCTGA
AGAAATCCAAACACCATCAGATCCCTCTACAAAAGGCTATAGGCAACAAN

Query= MSMg01no301_l22.b1 MSMg01no301_l22.b1 CHROMAT_FILE:
MSMg01no301_l22.b1 PHD_FILE: MSMg01no301_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:13 2005
         (680 letters)



>mm_chr5_59758501_59759580
          Length = 1080

 Score =  909 bits (470), Expect = 0.0
 Identities = 473/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattccagaaggtttttctgttcataaaatgcaaatgctatatagttctcctaaggaa 65
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggaattccagaaggtttttttgttcataaaatgcaaatgctatatagttctcctaaggaa 415

                                                                       
Query: 66  ttaagtgatggaaacataatttataaaaacagatatgaattaataaattttgtgtataat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttaagtgatggaaacataatttataaaaacagatatgaattaataaattttgtgtataat 355

                                                                       
Query: 126 tgtagcatacaagagcccattatcgtgcattagtgcaggcttctaataaaattttcaaag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgtagcatacaagagcccattatcgtgcattagtgcaggcttctaataaaattttcaaag 295

                                                                       
Query: 186 agttctgctactaattttaagagaacatatatgtcatcttatgattgaaagtttattttc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agttctgctactaattttaagagaacatatatgtcatcttatgattgaaagtttattttc 235

                                                                       
Query: 246 tattattatatggagttgtaattgtcattgtgatgcacacctttaatcccaccacttggg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tattattatatggagttgtaattgtcattgtgatgcacacctttaatcccaccacttggg 175

                                                                       
Query: 306 aggcagaggcaggtggatttctgagttcaaagccagcttgctctatagagtaagttccag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aggcagaggcaggtggatttctgagttcaaagccagcttgctctatagagtaagttccag 115

                                                                       
Query: 366 gacagccagggctctccagagaaaccctttttcgaaaaaccaaaatgaattcaggccaat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gacagccagggctctccagagaaaccctttttcgaaaaaccaaaatgaattcaggccaat 55

                                                                 
Query: 426 tttctctttttttcttctttgctagcatgcccacccatcccactgtgtcatagc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  tttctctttttttcttctttgctagcatgcccacccatcccactgtgtcatagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)