Query= MSMg01no302_a13.b1 MSMg01no302_a13.b1 CHROMAT_FILE:
MSMg01no302_a13.b1 PHD_FILE: MSMg01no302_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:34 2005
(318 letters)
>mm_chr5_44232503_44233220
Length = 718
Score = 536 bits (277), Expect = e-157
Identities = 304/313 (97%), Gaps = 4/313 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtgatttctatttcacaaaa-tcaaaaggtcagatcttatctagtttaaa-ca 62
||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||| |
Sbjct: 205 gaattcagtaatttctatttca-aaaactcagaaggtcagatcttatctagtttaaatga 263
Query: 63 ggatttggccggggcctctgctcagtgttttaaagtcagaacaagattttcttaatcagc 122
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 -gatttggccagggcctctgctcagtgttttaaagtcagaacaagattttcttaatcagc 322
Query: 123 taaactctgatgatacactattcaccaataaggaacttggctaacactctagaacatttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaactctgatgatacactattcaccaataaggaacttggctaacactctagaacatttg 382
Query: 183 taaaatagaaatgcatacacaaggaaacaagaattgactctgtgtgtgtgccggcatgaa 242
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 383 taaaatagaaatgcatacacaaggaaacatgaattgactctgtgtgtgtgccggcatgaa 442
Query: 243 ctgtgtccaagtgccaagaggtggtgtcaggcaaaggaagcaaatagcattctgtgtgtt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgtgtccaagtgccaagaggtggtgtcaggcaaaggaagcaaatagcattctgtgtgtt 502
Query: 303 tacataaagaggg 315
|||||||||||||
Sbjct: 503 tacataaagaggg 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_a13.g1 MSMg01no302_a13.g1 CHROMAT_FILE:
MSMg01no302_a13.g1 PHD_FILE: MSMg01no302_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:35 2005
(284 letters)
>mm_chr5_44390208_44390889
Length = 682
Score = 455 bits (235), Expect = e-132
Identities = 264/281 (93%), Gaps = 13/281 (4%)
Strand = Plus / Minus
Query: 1 ttcagagtttcccaccctaatcacttccccaaagcatgtaccgccaccccacccccgccc 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 532 ttcagagtttcccaccctaatcacttccccaaagcatgtaccaccaccccacc------- 480
Query: 61 ccatccagaatcttttttgatgaatttggaattgtgtagatgcacaggtcggggcatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ----ccagaatcttttttgatgaatttggaattgtgtagatgcacaggtcggggcatctg 424
Query: 121 atgatgccggggaggggcagtaaggttctgaagtgagggataaagacctttttttttttc 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 423 atgatgccggggaggggcagtaaggttctgaagtgagggataaagacc--ttttttttcc 366
Query: 181 tgataatttgctgaacttgggtaccagagtgctgtgttgtggggtcgcttcagggcgagt 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 365 tgataatttcctgaacttgggtaccagagtgctgtgttgtggggtcgcttcagggcaagt 306
Query: 241 atcagtttacaaggttttgtccagagcacatacacagtgct 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atcagtttacaaggttttgtccagagcacatacacagtgct 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 682
Length adjustment: 9
Effective length of query: 275
Effective length of database: 673
Effective search space: 185075
Effective search space used: 185075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
