BAC Information

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BAC

Clone NameMSMg01-302A17
Chromosome5 (Build37)
Map Location 52,463,719 - 52,464,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302A17.T7 (MSMg01no302_a17.b1)MSMg01-302A17.TJ (MSMg01no302_a17.g1)
ACCAG428056AG428057
length741764
length of high quality
(start - end)
318 (37 - 354)288 (66 - 353)
definitionCHROMAT_FILE: MSMg01no302_a17.b1 PHD_FILE: MSMg01no302_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:35 2005CHROMAT_FILE: MSMg01no302_a17.g1 PHD_FILE: MSMg01no302_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGG
TAACATCACCTTGCTTCCTTCCTAGCAGGCAGTTTGGTGCATGCATGCTT
TTTTGGCTTGACCTGGAAAATAGGAATATTGGTGTAGCATTTCCCAAAGG
TGAAGAACATATTAACTAAGGTTTTTGCAGCTTTCTGAGCGTCTGAGGCT
TAAAAAGGACAAGACGTTCCTCAGGGTCTGTTTGCCATAGTGCAGTCTGC
CTTCTGTGTATGCTTTCGACCACATTGTCTGGGTCTTTATCTTTTCAGGA
TAGCTCTATTACCCTAAGGTACATATTTTTCCAAACATTATAAGATGCCT
GGTGTGTTTACACTACACCCACACAAATCCATGCGTGTGAGCCAGACGTG
GTGTGTTTTGAGCACTTACGGCAGGATCGCATTGGCTGTTTGGAAGTCCT
ACATCTGCAGTGCTCGCTAGGCCATACTTACCCGTAATGCAGGGTTTTAA
GGTCACTACCGGTTATTATCTGGCTGGTAATGACCACAGAACTATACATT
ATTGCTATTAGGAGCCATTTTGGTCCTATTTTCAGTTTTCCTTTTTTTTT
TTTTATTGAGTAGCTGCTGACACCCAGGCTCTTGGAGGTTGGATTACAGT
AGCTCGGAGTCTTGGTCACTCTCTGCATGCTGTTTTGGGGAGGAGTTGTG
TACAGCTGCCGCTTTGTGCATACTGTCTAGGAGACTCTTGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATAGAAATGTTATAATCTGCTCTTAGGAGTCAATG
TTCTTACCAAGATATGTTTACATTTCTGGGGCAGGGGCTATCTGAAAAGC
TGTTGCCTGTCTGTGGGCTATGTTCTTCTAGCTGGGTTTCCTTGTCAGGC
CTCAGTGGGAGAGGATGCATCTAGCACCTCAGAGACTCGATGGGCCAGGA
TGGAAGGAGAACCAGGGAGACCTCAACTTCTCAAAGGAAGAGGGATGGGG
AGAAGGGTGAAAGGATTGTGGGAGGGTTGACTGGGTTGNCAGAGAGCAGG
ATTTTAATGGATTCCCANACCAAANACCCCAATTTATAATTAATTAAATA
AATGCGCGCGTACCTATATAAAAAAAAAAAAAAAGCGGGGGGGGGGGGGG
AACATTGCCTGACACCCTCTCCCACCAGCAGACTATAACATGTCTATAAG
TATCCATTTCATTATTTCCTTATATATATATTATGTTTACCTATATATAC
ATTCTATATACCTATATATACTTGTGTATACTGTGTTTATCATGCCTAGC
TCGTTAATACCATCAATGGTTCCATACACCCCACTCCATATAACCGCATT
CTTTCTGTTGCCCATTTTTCCTTTTTTCCCTAACCCAAATAATCCTTTCC
CCCATATTTATATATCCCCACACCTCCCTTCGCTATTTGGCCTTGTTTTA
TTCCCTTTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_a17.b1 MSMg01no302_a17.b1 CHROMAT_FILE:
MSMg01no302_a17.b1 PHD_FILE: MSMg01no302_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:35 2005
         (318 letters)



>mm_chr5_52463515_52464232
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggtaacatcaccttgcttccttcctagcaggcagtttggtgcatgcatgctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcttggtaacatcaccttgcttccttcctagcaggcagtttggtgcatgcatgctt 459

                                                                       
Query: 65  ttttggcttgacctggaaaataggaatattggtgtagcatttcccaaaggtgaagaacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttttggcttgacctggaaaataggaatattggtgtagcatttcccaaaggtgaagaacat 399

                                                                       
Query: 125 attaactaaggtttttgcagctttctgagcgtctgaggcttaaaaaggacaagacgttcc 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 398 attaactaaggtttttgcagctttctgaacgtctgaggcttaaaaaggacaagacgttcc 339

                                                                       
Query: 185 tcagggtctgtttgccatagtgcagtctgccttctgtgtatgctttcgaccacattgtct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcagggtctgtttgccatagtgcagtctgccttctgtgtatgctttcgaccacattgtct 279

                                                                       
Query: 245 gggtctttatcttttcaggatagctctattaccctaaggtacatatttttccaaacatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gggtctttatcttttcaggatagctctattaccctaaggtacatatttttccaaacatta 219

                         
Query: 305 taagatgcctggtg 318
           ||||||||||||||
Sbjct: 218 taagatgcctggtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)