ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGAATCACACTTTTCTGAATCAAACTGAGCTCAGCTTCATTCAACT
ATATGGAACTGAACTGCACTCACTGAACTGACTAACTCTTAAGTAGCCTC
TCTTGCCTGTCTGTTCTCATGAGAATTGAGCATATCCAGTCTCTGACTCA
TTCTGTCAAATATTTCTGTGATTTATCACTTTGTCTGCCCTTCAATTAGG
TGTCACTTCCAAACACGGCTGCTTCCTTCTACACACTAATTTTACCTTCA
TTGTTTGAGATTAAAAGTGTGTACTAAAATTGTGTCTATAATCCAGGCTC
AGGGATTAGAGGTGTGTCACCGCAGTAGGATCACACAAATTTACAAATTC
TTTGATGTGATCCCTTGCTAGAGCAGCCATATTGCTGGATTAAAATTCCT
CTACAGGGAATCCCCAACTACCAAAAATAATTATACAAATAAAACAAACC
TTAAGAACTTGTAGATAATAACTAAAATTAAACAAAGAGAACAAGAAGAA
AGAAGCCAGCAAACCATGCTTCTCCATATCCTTGCTCCCAGATGGTTATA
ATGGACTTCAAATATATGTTCTAGTATAAATGTTATCAACATTAAGAATG
CAACTAATATTTTAAAGTAAAACTATTAAAATCCTTCTTCTTGACTGTAT
CAGCTACTTTCCTTGTGTCTGTGACCATACAATAGGAAGCAATTTAA

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGAAAGCCAGGGCTGTACAGAGAAA
CCCTGTCTCAAAAAACTACCAAAAAAAAGAAAAACAACAACAACAAAAAA
AAACAAAACAAAAACAACAACAACAACAACAACAACAAAACCCACTAAAC
AAAACAAAAACAAAAACAGAAAAAAAAGAAAAAAAACAAAACATCAAAAC
ATAAATATTTCTTATCAAGTGCTATTTGTGTGTTTGTGACTATTCATTTT
AGTTTTTAACCATTCAAAATACTGAAGAAAGCCTCCAGAACAGGACTGCG
GGGAGACAGATCAGTGGGTAGTGCATCTTGGTCTATATGAGGACCTGACT
CTGGATCTTTAATACTCATGAAAAGGCTAAGCATGTTTGCAAATGTCAAT
AATCCCAGAAACAAGGGATGAATATAGGCCAGTCCTAAGAGGCATCCTAG
TGAAAATGGTAATTTCTGGTTCAGCAAATAAAACCTACTTTCAAGAGCTA
CAGCAAAGAGCAATAAAGGAAGACAGCAACAACTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCT
CCTTCTCCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCT
AAATCCTCCTCCTCCTCATCCTCCTCCCCCTTTTCCTTTACCTCTCTG

Query= MSMg01no302_b16.b1 MSMg01no302_b16.b1 CHROMAT_FILE:
MSMg01no302_b16.b1 PHD_FILE: MSMg01no302_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:40 2005
         (704 letters)



>mm_chr5_16575094_16576197
          Length = 1104

 Score = 1174 bits (607), Expect = 0.0
 Identities = 667/687 (97%), Gaps = 3/687 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  acttttctgaatcaaactgagctcagcttcattcaactatatggaactgaactgcactca 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 acttttctgaatcaaactgagctcagcttcattcaactatatggaactgaactgcactca 278

                                                                       
Query: 80  ctgaactgactaactcttaagtagcctctcttgcctgtctgttctcatgagaattgagca 139
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 279 ctgaactgactaactcttaagtagcctctcttgcctgtctgttctcatgaaaattgagca 338

                                                                       
Query: 140 tatccagtctctgactcattctgtcaaatatttctgtgatttatcactttgtctgccctt 199
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tatccagtctctaactcattctgtcaaatatttctgtgatttatcactttgtctgccctt 398

                                                                       
Query: 200 caattaggtgtcacttccaaacacggctgcttccttctacacactaattttaccttcatt 259
           ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 399 caattaggtgtcacttccaaacatggctgcttccttctacaaactaattttaccttaatt 458

                                                                       
Query: 260 gtttgagattaaaagtgtgtactaaaattgtgtctataatccaggctcagggattagagg 319
           ||||||||||||||||||||||||||||| |||||||||||||||| || |  |||||||
Sbjct: 459 gtttgagattaaaagtgtgtactaaaattatgtctataatccaggcacaagtcttagagg 518

                                                                       
Query: 320 tgtgtcaccgcagtaggatcacacaaatttacaaattcttt-gatgtgatcccttgctag 378
           |||||| | |||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 519 tgtgtctctgcagtaggatcacacaaatttacaaattctttggatgtgatcctttgctag 578

                                                                       
Query: 379 agcagccatattgctggattaaaattcctctacagggaatccccaactaccaaaaataat 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agcagccatattgctggattaaaattcctctacagggaatccccaactaccaaaaataat 638

                                                                       
Query: 439 tatacaaataaaacaaa-ccttaagaacttgtagataataactaaaattaaacaaagaga 497
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tatacaaataaaacaaaacct-aagaacttgtagataataactaaaattaaacaaagaga 697

                                                                       
Query: 498 acaagaagaaagaagccagcaaaccatgcttctccatatccttgctcccagatggttata 557
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 698 acaagaagaaagaagccaacaaaccatgcttctccatatcctcgctcccagatggttata 757

                                                                       
Query: 558 atggacttcaaatatatgttctagtataaatgttatcaacattaagaatgcaactaatat 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 atggacttcaaatatatgttctagtataaatgttatcaacattaagaatgcaactaatat 817

                                                                       
Query: 618 tttaaagtaaaactattaaaatccttcttcttgactgtatcagctactttccttgtgtct 677
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 818 tttaaagtaaaactattaaaatccttcttcttgactgtatcagctactttccctgtttct 877

                                      
Query: 678 gtgaccatacaataggaagcaatttaa 704
           |||||||||||||||||||||||||||
Sbjct: 878 gtgaccatacaataggaagcaatttaa 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)