Query= MSMg01no302_i20.b1 MSMg01no302_i20.b1 CHROMAT_FILE:
MSMg01no302_i20.b1 PHD_FILE: MSMg01no302_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:13 2005
(320 letters)
>mm_chr5_77699647_77700367
Length = 721
Score = 543 bits (281), Expect = e-159
Identities = 305/313 (97%), Gaps = 1/313 (0%)
Strand = Plus / Plus
Query: 8 ttccaggacagccagggctggacaaatagaaccttctctggggtagggtggactggagga 67
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 208 ttccaggacagccagggctggacaaatagaaccctctctggggtagggtggactggagga 267
Query: 68 tagggttgggcccgacaggcacaaaacaagaaaaattcaggtctgctgttctaaagggca 127
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagggttgggggtgacaggcacaaaacaagaaaaattcaggtctgctgttctaaagggca 327
Query: 128 aacattctaatccagtctgcacacagtagggaa-gatagaaggctttagattctgaagtg 186
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 328 aacattctaatccggtctgcacacagtagggaaggatagaaggctttagattctgaagtg 387
Query: 187 gggacctttatgtttccataagaccagaaacttcatgtgtgcagtgaaaactgcagttgc 246
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 388 gggaccgttatgtttccataagaccagaaacttcatgtgtgcagtgaaaattgcagttgc 447
Query: 247 taacagcagtggtctgcagtgtgagccagggctcctagctgctgcatgcacagaccccag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 taacagcagtggtctgcagtgtgagccagggctcctagctgctgcatgcacagaccccag 507
Query: 307 tgttctgtgcatg 319
|||||||||||||
Sbjct: 508 tgttctgtgcatg 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space: 221432
Effective search space used: 221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_i20.g1 MSMg01no302_i20.g1 CHROMAT_FILE:
MSMg01no302_i20.g1 PHD_FILE: MSMg01no302_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:13 2005
(287 letters)
>mm_chr5_77873190_77873877
Length = 688
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%), Gaps = 1/287 (0%)
Strand = Plus / Minus
Query: 1 tttc-cacagaccttgcggcttagacctttggcatcattcagatcactggtctgcaggag 59
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttcacacagaccttgcggcttagacctttggcatcattcagatcactggtctgcaggag 428
Query: 60 aggggacatagatcagttaggtcatatactctaaatgacaatctttgtgctgctgatggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aggggacatagatcagttaggtcatatactctaaatgacaatctttgtgctgctgatggt 368
Query: 120 gactacagttccgcagccggtatttttaacagatatcttcagatagactggatttactgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gactacagttccgcagccggtatttttaacagatatcttcagatagactggatttactgc 308
Query: 180 tgaaaaaggtagagagtacctgtaaagagaggaacaggtgcattaaagaacaaaagcagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 307 tgaaaaaggtagagagtacctgtaaagagaggaacaggtgcattaaagaacaaaagcggc 248
Query: 240 ttaatggctttgttaaggttgctatggaaatgactaaatgtgaattt 286
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttaatggctttgttaaggttgctatggaaatgactaaatgtgaattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
