BAC Information

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BAC

Clone NameMSMg01-302O13
Chromosome5 (Build37)
Map Location 11,983,398 - 11,983,683
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302O13.T7 (MSMg01no302_o13.b1)MSMg01-302O13.TJ (MSMg01no302_o13.g1)
ACCAG428658AG428659
length743744
length of high quality
(start - end)
318 (37 - 354)287 (67 - 353)
definitionCHROMAT_FILE: MSMg01no302_o13.b1 PHD_FILE: MSMg01no302_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:39 2005CHROMAT_FILE: MSMg01no302_o13.g1 PHD_FILE: MSMg01no302_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGA
ATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATTTGTTCATTGTCCNTGCTTTCCCGTGAAGTTCTTTGATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAAATATGGATCGATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCT
GTCTCTATACCAGTACCATGCAGGTTTTTACCACAATTGCTCTGTAGTAA
AGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAG
AAGAGTTTTTGCTATCCTAGGCTTTTTGTTATTCCAGATGAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTAAAGAAATGCAAGAATAGGGATTGTCTGTCC
ACGTGACCCCATCCTCTGATTACTCGTTCTGCAGACGCTTTCAGTGGTCA
TTTCTTAAAAAGTCACTGGAGTAACCCAGTCTTGAATGACAGTATTCATT
TGAAAAGAAAACAAGTTTTCTATTCTATTTCAGGAGAATATTCCCAGCTT
TTTTGTCTGAAAATATCATTATAAAAATTTCATATGTAGAGGCATGTGCT
GTTGAATCATAGAATCTTTACATTATGCATATATATGCAGATACATACAT
AGTTACCATANACTCANANACCCANANCCCCACACATTTATTATATATAT
ANANATANACCCAAAAAAAAAAACTGAATTGAAAAAATCGGAGGGGTGGG
TATTAACTCTAAATATTTGCTTAGATATTAGGAATCACTCTAAGGAATCT
TTTAAGGCTTTCCTATTACTCCAATGAAAGCTAATAATGACTGGACACTT
AAATTATGTGTGGCATTATCTTAAGCATCTGCAATTGATTTTCTTAATCC
TCATAACAATACTATGAAGGTATTTTATTATTCTCCTTTTAAACAAAAGG
AAATTGAGGTACAGAGAGGCTAAGTGGGCAAGGTCAAACATCTGGTAAGT
GGCAAGCACCCTGAGGCTCTTTTGATTGTTTTTGCAAAGACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_o13.g1 MSMg01no302_o13.g1 CHROMAT_FILE:
MSMg01no302_o13.g1 PHD_FILE: MSMg01no302_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:40 2005
         (287 letters)



>mm_chr5_11983198_11983884
          Length = 687

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaaagaaatgcaagaatagggattgtctgtccacgtgaccccatcctctgattactcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctaaagaaatgcaagaatagggattgtctgtccacgtgaccccatcctctgattactcg 427

                                                                       
Query: 61  ttctgcagacgctttcagtggtcatttcttaaaaagtcactggagtaacccagtcttgaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttctgcagacgctttcagtgatcatttcttaaaaagtcactggagtaacccagtcttgaa 367

                                                                       
Query: 121 tgacagtattcatttgaaaagaaaacaagttttctattctatttcaggagaatattccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgacagtattcatttgaaaagaaaacaagttttctattctatttcaggagaatattccca 307

                                                                       
Query: 181 gcttttttgtctgaaaatatcattataaaaatttcatatgtagaggcatgtgctgttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcttttttgtctgaaaatatcattataaaaatttcatatgtagaggcatgtgctgttgaa 247

                                                         
Query: 241 tcatagaatctttacattatgcatatatatgcagatacatacatag 286
           |||||||| |  ||||||||||||||||||||||||||||||||||
Sbjct: 246 tcatagaaacaatacattatgcatatatatgcagatacatacatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)