BAC Information

Click to search

BAC

Clone NameMSMg01-303E16
Chromosome5 (Build37)
Map Location 78,718,815 - 78,719,057
singlet/doubletsinglet
Overlap geneLOC100039398
Upstream gene2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneMthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303E16.T7 (MSMg01no303_e16.b1)MSMg01-303E16.TJ (MSMg01no303_e16.g1)
ACCAG428926AG428927
length710737
length of high quality
(start - end)
54 (224 - 277)246 (121 - 366)
definitionCHROMAT_FILE: MSMg01no303_e16.b1 PHD_FILE: MSMg01no303_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:10 2005CHROMAT_FILE: MSMg01no303_e16.g1 PHD_FILE: MSMg01no303_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGGCGCTAAAGACTCCTATTTCCGACCGCGCGGAANCCNNATTTGC
TGCAGGGGGACACNNANGAGAGAAGAGAAGAAGAGCNNGCNGTTTCCCCC
CAACAAGNGAAGNANGGCGAGNNCNACACCGGNANCCCACNAAGCACACG
CANAGAGGAAACAGCAGAGGACAGNCAGCGAACCCAAGCNGCNGAAAAGA
CAGGAAACCCCACNCCGGTTTTTTTTAAATTTTCATATTTTAAATATCCT
GGTCTCGTTTTCATCCACTATGATCAGAAGGTCTTTTTTTTTTTTTAGCA
GAGAACNCNNCCCGACAAGGCNGCAAAANAANAACCCCCCCGCCGCCCAA
AGGACACANCCNGAGCACCAANNCAACCAGGGCCCACCAGCGGAGAGACA
AAAACCAGGNCACACAACCACGCAGGACAGAACGAGCACACAGAAAAANA
CGCACGCAAGNACCCCGCCCAAGAAGAAAGAGAGAGCACGAAGCCCAAGG
CCACCCACCCGAGGGACACGCACGCAACGCCCCAACCGGAACAGCCCCCC
GACGCCAAACGGGGCGCAGCGCGCAGACACGAACCACAAGCAAGGACAAA
CCCCACAGACGCCAACCCCTTATTTTTTTTTTTTCCCCCCGACCACGCCC
CCCTTCCTTTTCCTCCTATACTGTGCTTCCCCTCCCTTCCGCCGGTATCC
TTCCATTTCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAAGCCCCTTTACAAGGCTCTATGTATAA
ATCAGTTGCTGGTAGACTGCAGACTCTGGAGTGGAACTGTCAGTCAGTTG
TGCAAGTAGCTCTAGGGATGCAGTACTTATGAACTGTCATCTCTTTATGA
TGGGGTTGTTGTTGTTGATGTTGTTGTTTTCATGAATAAGCTGCCTTTGG
TCACAAATAATCATGAAACGATCCTCTCACACTTCCTTCTCAACGTATCA
TCAATAAAATAATTGGTTCTTCAAGATAGAAAAGTGTAAACTATTTTCTT
CAGCCTGTTTTTTTTGTCTCCCCCCCCCCGAATAGAAGCTTACTTGTTGG
TCTCTAGAAAACGCCACAAAAATAAATGAAAACTATGACAGGCGTACTGT
AACCCAGGCTAGAGAAAATGGTCATGGTGTTAGTCTGATGTATAGTCTAA
TAATGCACAGTGTTTGGAATCCATTTCTTAGCCACTAAAGATTTCTATTT
GAAATCTATCAAAATTGTTGGTTTTAATTTGTACCCTTTGTTAGAAACAT
GCATAAGGAAGGTAAAATATTCCTTCTATGTAATGCAACCCTAAGAGAAA
CCATTAACCCTATCTATTAATACTTTAAATATTTTTTCTCTGCAATCTCT
TCTTTCTCCTTGATTTAAGATGCACATCGTATTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_e16.g1 MSMg01no303_e16.g1 CHROMAT_FILE:
MSMg01no303_e16.g1 PHD_FILE: MSMg01no303_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:10 2005
         (246 letters)



>mm_chr5_78718619_78719264
          Length = 646

 Score =  412 bits (213), Expect = e-119
 Identities = 234/243 (96%), Gaps = 4/243 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactctggagtggaactgtcagtcagttgtgcaagtagctctagggatgcagtacttat 60
           |||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||
Sbjct: 197 agactctggagtggaattgccagtcagttgcgcaaatagctctagggatgcagtacttat 256

                                                                       
Query: 61  gaactgtcatct----ctttatgatggggttgttgttgttgatgttgttgttttcatgaa 116
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaactgtcatctatctctttatgatggggttgttgttgttgatgttgttgttttcatgaa 316

                                                                       
Query: 117 taagctgcctttggtcacaaataatcatgaaacgatcctctcacacttccttctcaacgt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taagctgcctttggtcacaaataatcatgaaacgatcctctcacacttccttctcaacgt 376

                                                                       
Query: 177 atcatcaataaaataattggttcttcaagatagaaaagtgtaaactattttcttcagcct 236
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 377 atcatcaataaaataattggttcttcaagatagaaaaatgtaaactattttcttcagcct 436

              
Query: 237 gtt 239
           |||
Sbjct: 437 gtt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)