NNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGCACTTGACAGGAGGCAGCAAGACTACTGTAGGCCTGA
GCAATGCCAGCCTGAGGGATACATACCAAGATCCCTGTGCCTTGGGGGAG
AAGAGGCAAGGGTGTCTTTCACATGAAGCAAATATAAACAAAAACTAGAA
AATGTTTCATATTAATCAGGTGTAGCTACTTACTAATCGTCATTATATCA
TATAAAAAGTAGTTTTTCTGGGAGGCACAAGCAGGCGAGTTTGAGGCCAG
CCTGAACTACAAAGCAAGGTCCAGGAAAGCCAGGGCTATGGAAAGAAACT
CTGTCTTAACAAACAAACAAACAAACAAACTGAAAGAACACCAAACAACT
GCCCCCCCCCCGAGTGATAATTGCTTCTACACCTTCTCAGAGCTTTGTTA
AATTCCCTAAACCGTAAAAAACAAACACACACAAACAAAAACCTTTCATA
GGAGATATGGGAATGTGGCCAAGATAAGTGCAAGTTAATCTATGTCTGGT
TTTCCTGTTAATAACTAGACAACTTTTAAAGCTGGTTCATATAATCATAT
TTCCCTTTGGTTAAGCTGCATCAATGACAGAAAAGATACATGGACGTTAG
AAACATCCATGTATGAATCATAAAGTGATTATGAGACCTANAGCTTCCTC
CCATCCTGAACAACCAAAGTCCTAA

NTCGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTCTGAACATCTATGCTC
CAAATGCAAGGGCATCCACAGTCATAAAAGAGACTTTACTAAAGCTCAAA
GCACACATTGCACCCCACACAATAATAGCGGGAGACTTCAACACCCCACT
CTCAGCAATGGACAGATCATGGAAACAGAAACTAAATCGAGACGCAGTGA
AACTGACAGAAGTTATGAACCAAATGGATCTAACAGGTATTTATAGAACA
TTTCATCCTAAAACAAAAGACTATACCTTCTTCTCAGTACCTCATGTACC
TTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCATAAGATA
CAAGACTGAAATAATCCCATGCACCCTATCTGATCACCACGGACTAAGGC
TGGTCTTAAATACCAACAAAAACAACAGAAAGCACACGTACACACGGAAG
CTGAACAAAGCTCTGCTCAATGATAACTTGGTCAAGGAAGAACTAAAAAA
AGAAAGTAAAGTCTATCTTTTTAGAATTTAATGAAAATGAAGGCACATCA
TATCAAAGCTTATGGGACACAATGAAAGCAGTGCTAAGAGGAAAACTCAT
AGCTCTGAGTGCTTCCAAAAAGAAACTGGAGAGAGCACATACTAGCAGCT
TGACAGCACACATGAAAGCTC

Query= MSMg01no303_h08.b1 MSMg01no303_h08.b1 CHROMAT_FILE:
MSMg01no303_h08.b1 PHD_FILE: MSMg01no303_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:23 2005
         (675 letters)



>mm_chr5_148306192_148307268
          Length = 1077

 Score = 1216 bits (629), Expect = 0.0
 Identities = 657/672 (97%), Gaps = 10/672 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattccagcacttgacaggaggcagcaagactactgtaggcctgagcaatgccagcctg 64
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 gaattccagcacttgagaggaggcagcaagactactgtaggcctgagcaatgccagcctg 1010

                                                                        
Query: 65   agggatacataccaagatccctgtgccttgggggagaagaggcaagggtgtctttcacat 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 agggatacataccaagatccctgtgccttgggggagaagaggcaagggtgtctttcacat 950

                                                                        
Query: 125  gaagcaaatataaacaaaaactagaaaatgtttcatattaatcaggtgtagctacttact 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  gaagcaaatataaacaaaaactagaaaatgtttcatattaatcaggtgtagctacttact 890

                                                                        
Query: 185  aatcgtcattatatcatataaaaagtagtttttctgggaggcacaagcaggcgagtttga 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  aatcgtcattatatcatataaaaagtagtttttctgggaggcacaagcaggcgagtttga 830

                                                                        
Query: 245  ggccagcctgaactacaaagcaaggtccaggaaagccagggctatggaaagaaactctgt 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  ggccagcctgaactacaaagcaaggtccaggaaagccagggctatggaaagaaactctgt 770

                                                                        
Query: 305  cttaacaaacaaacaaacaaacaaactgaaagaacaccaaacaactg--ccccccccccg 362
            |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 769  cttaacaaacaaacaaacaaacaaactgaaagaacaccaaacaactgccccccccccccg 710

                                                                        
Query: 363  agtgataattgcttctacaccttctcagagctttgttaaattccctaaaccgtaaaaaac 422
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 709  agtgataattgcttctacaccttctcagagctttgttaacttccctaaaccgtaaaaaac 650

                                                                        
Query: 423  aaacacacacaaacaaaaacctttcataggagatatgggaatgtggccaagataagtgca 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  aaacacacacaaacaaaaacctttcataggagatatgggaatgtggccaagataagtgca 590

                                                                        
Query: 483  agttaatctatgtctggttttcctgttaataactagacaacttttaaagctggttcatat 542
            |||||||||||||||||||||||||||||||||||||||||||||||||        |||
Sbjct: 589  agttaatctatgtctggttttcctgttaataactagacaacttttaaag--------tat 538

                                                                        
Query: 543  aatcatatttccctttggttaagctgcatcaatgacagaaaagatacatggacgttagaa 602
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537  aatcatacttccctttggttaagctgcatcaatgacagaaaagatacatggacgttagaa 478

                                                                        
Query: 603  acatccatgtatgaatcataaagtgattatgagacctanagcttcctcccatcctgaaca 662
            ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 477  acatccatgcatgaatcataaagtgattatgagacctaaagcttcctcccatcctgaaca 418

                        
Query: 663  accaaagtccta 674
            ||||||||||||
Sbjct: 417  accaaagtccta 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1077
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1067
Effective search space:   709555
Effective search space used:   709555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)