XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTATTCCATGCCGATTTGGGGAAGACTTTGATCTGATCAGCTCAGTGAG
TTCTGTGACATAACTGGCACTTGGCTAAGGAAAAGGGACTTCATGCACAC
GCTCTCATGACTCTCTTATTAAAACAAATCATTCTAAACACTCTGCTCTG
CCCCATCAAAGCCACAGTGACAGGGCAGGGCAGTGACTGCATATTCATTC
CAGAGCACTCAATCAAACATGGTGGCTCAGATCCCAGAAGGATACTGCAG
CTGCTCCAGGGCCTGGTGGTTGATGGTGCTCATGCTGTTGTAGACGAAGG
TGCTGCTCAGAAGCACACTTAGGGCGAAGATCCATGAGTCGTTTTTAGGA
TTACTCTGGAAGATATGTGAAGGAAGAGGGCTGAGCAGAGCACTCCTCAG
AAGAGACTTGGGCTGGTCCTGTGGCCTTGTTACTCCATGTACTCTGGGGG
CCAACGAAGGAGGAACAAAAACCCTCCTCCTGGTTAAAGGATTAATGTAA
GGTCAGCCTGAGAAACTTAGTGGAATCTATATCACTCTGCACAGGATAAA
AACTTAAAGTGAAGTACAGACCTCAATGTATGATCAGGCACCCTGAATTT
CACAAGCAAGGGCAGGGGAGAATAAACTTGAACTCATTTGCACAGGAAAG
TGTTCTTAACAGGATACAGACCACACAGACTCTAANA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGGGTTCCGGGCATAGTACTTAGATTCTAATG
AACAAACTAAAGGTTCTTATTTCCAAAAACCCTTCCAGTTTCTGTGATAA
ACCAACCTGTGTACTCTGATACAGTCTAGTAACTGGAAAGCATCCGTAGA
GAGAGAGGCAAGAGCTACCATGGACCAGCCTCTGTTCTGTCAATCTTCAG
AGGGAGAGCTGTGGCTAGAAGTTCTTCTTTTTTTTTTTTTTTTTTTTTTT
GCTATACTTTCTTTTTTTTATTGGATGTTTTCTTTATTTACATTTCAAAT
GTTATCCCCTTTCCTAGTTTTCCCTCTGAAAATCCCCTATCTCCTCCCCT
CTCTCCCTGGTCCCCAACCCACCCACTCCCACTCCTGGGCCTGGTATTCC
CCTATACTGGGGCATAGAACCTTCACAGGACCAAGAGCCTCTCCTCCCAT
TGATGAGCTAGCCTATGTTTGGTCAAGGATGCTGGGTCTCCATCCCTGTT
GCCTCTCTATTCATGGAAGTGTTTTCTGGAAGCCTTTGTCATTGAAAGTG
CTGGCTTGTGAGTATTGCTATCTGCCAGTACTCATTGCTAGAGGAACAAG
GCCTTCTGTTTTGAAAGGTGACCCAGGCAACACAGTGCCACTTCTACTAG
GAGCAGTGAGGTATAAGGATGCTTTGCTGAGAAGG

Query= MSMg01no303_i04.g1 MSMg01no303_i04.g1 CHROMAT_FILE:
MSMg01no303_i04.g1 PHD_FILE: MSMg01no303_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:26 2005
         (572 letters)



>mm_chr5_105563459_105564430
          Length = 972

 Score =  745 bits (385), Expect = 0.0
 Identities = 402/411 (97%), Gaps = 7/411 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggttccgggcatagtacttagattctaatgaacaaactaaaggttcttatttccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttgggttccgggcatagtacttagattctaatgaacaaactaaaggttcttatttccaaa 345

                                                                       
Query: 61  aacccttccagtttctgtgataaaccaacctgtgtactctgatacagtctagtaactgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aacccttccagtttctgtgataaaccaacctgtgtactctgatacagtctagtaactgga 285

                                                                       
Query: 121 aagcatccgtagagagagaggcaagagctaccatggaccagcctctgttctgtcaatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aagcatccgtagagagagaggcaagagctaccatggaccagcctctgttctgtcaatctt 225

                                                                       
Query: 181 cagagggagagctgtggctagaagttcttctttttttttttttttttttttttgctatac 240
           ||||||||||||||||||||||||||||||      ||||||||||||||||||||||||
Sbjct: 224 cagagggagagctgtggctagaagttcttc------tttttttttttttttttgctatac 171

                                                                       
Query: 241 tttcttttttttattggatgttttctttatttacatttcaaatgttatcccctttcctag 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tttc-tttttttattggatgttttctttatttacatttcaaatgttatcccctttcctag 112

                                                                       
Query: 301 ttttccctctgaaaatcccctatctcctcccctctctccctggtccccaacccacccact 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 111 ttttccctctgaaaatcccctatctcctcccctctctccctgctccccaacccacccact 52

                                                              
Query: 361 cccactcctgggcctggtattcccctatactggggcatagaaccttcacag 411
           ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 51  cccactcctggccctggtattcccctatactggggcatagaaccttcacag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)