TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCTATATGTCCAGTCATTAAGAATGTACACTCGCAGGCTGGACCTAG
GCCTCCCACACATATGGATCTGATGTGCAGCTTGGTCTTCATGTGGGTCC
CAAACAACTGGAGCAGGGGCTATCCTAAAAGCTGTTGCCTACACATGGAA
TATGTTCTTCTAGCTGGGCTGCCTTGTCTGCCTCAATGGGAGAGGAAGCA
CCTAGCCTCCCAGAGACATGAAGTGCCAGGGTGGGGGATATCCAGGGGAG
CCCCCATGCGCTCAGAGAAGGGGAAGGGGAAGGAGGGGGAGGGGCTAAGG
GAGGCAGTGAGCAGGATATAAAGAGAGTAAGTAAAAAAAAATCAAATTAA
AAAAAGAGAAAAGAATGAAGACTATATGCTCTTCTCTCATATCTTCCTGC
AGTTCTCTCAGATCATTCTAGAAGGGCTAGCAGGGTTGTTCAAGCTGTCA
CCTTTCAATAGGACGCTGACATCTACAAATGTATCCAGCCACATTCATGG
GAAATATGGGACACATGGGTTCACAAGCTGGACACCTCCCAAAGCCACGA
GCAGGGAACGCAATGCCAACCATGTATGACTCAAAATAAACTTGGTTTCC
AGTGGATACAAAGAAAGGATCTGATGAGCCCTGTCTCTGCTTACCACATC
CAACCCTGGAAACGCCGCCCGGCCTTTGGTCTCAATCATTTCTTCCATCN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAACAGGAACTACAAGGTAAGCTTCACCAA
GTAAATATGAGAGATTGAAGAAAAGAGAGAATCTCAGACATTGAAGATGT
CAGAAGAAATGGTACATCAGTCAAAGAAAATGTTAAGCCTTAAAAATTTC
CTGACACAAAACATCCAGGAAATCTGGGATGCTATGAAAAGAGCAAATTT
AAGGATAATAAGAATAGAAGAGGAAGAAACCCAGCTCAAAGGCCCAGAAA
ATATTTTCAACAGAATCATAGAAGAAAAAAAATTCTAACCTAAAGAAAGA
GATGCCTATAAAGGTACAAGAAACATACAGAACACCAAGTAGATTTGGCC
TGAAAAGAAAGTTCTCTGACCACATAATAATCAAAATACTAAACATACAG
AACAAAGGAAAATGCCAAGTAACAAACAAAAGCATATCTATTAGGATTAT
ATTTGCTTTCTCAATGGAGACCCTAAAAGCCAGAAAAGAAGTACTGCAGT
CTCTGAGACCACAGATGCCAGACCAGACTATTATACCCAGCAAAACTCCC
AATCAACATGGATGGAGAAAATAAGACATACCATGATAAAACCAAATTTT
AACAATATTTATATACAAATCCAGTCCTAGAGAGGGTTATGGAAGGAACA
CTCCATCACAACCATCAAAACAGAGGGACTAAATAATCCCGGATCACTAA
AA

Query= MSMg01no303_j18.b1 MSMg01no303_j18.b1 CHROMAT_FILE:
MSMg01no303_j18.b1 PHD_FILE: MSMg01no303_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:34 2005
         (665 letters)



>mm_chr5_34988959_34990023
          Length = 1065

 Score = 1123 bits (581), Expect = 0.0
 Identities = 640/661 (96%), Gaps = 4/661 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctatatgtccagtcattaagaatgtacactcgcaggctggacctaggcctcc 64
           ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctcctatacgt-cagtcatcaagaatgtacactcgcaggctggacctaggcctcc 267

                                                                       
Query: 65  cacacatatggatctgatgtgcagcttggtcttcatgtgggtcccaaacaactggagcag 124
           |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cacacatatgtagcagatgtgcagcttggtcttcatgtgggtcccaaacaactggagcag 327

                                                                       
Query: 125 gggctatcctaaaagctgttgcctacacatggaatatgttcttctagctgggctgccttg 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 328 gggctatcctaaaagctgttgcctacacatagaatatgttcttctagctgggctgccttg 387

                                                                       
Query: 185 tctgcctcaatgggagaggaagcacctagcctcccagagacatgaagtgccagggtgggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tctgcctcaatgggagaggaagcacctagcctcccagagacatgaagtgccagggtgggg 447

                                                                       
Query: 245 gatatccaggggagcccccatgcgctcagagaaggggaaggggaaggagggggaggggct 304
           |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | |
Sbjct: 448 gatatccaggggagcccccatgggctcagagaaggggaaggggaaggagagggaggtgtt 507

                                                                       
Query: 305 aagggaggcagtgagcaggatataaagagagtaagtaaaaaaaaatcaaattaaaaaaag 364
           ||||||||||||||| ||||||||||||||||||||||||||||   |||| ||||||||
Sbjct: 508 aagggaggcagtgaggaggatataaagagagtaagtaaaaaaaa---aaatcaaaaaaag 564

                                                                       
Query: 365 agaaaagaatgaagactatatgctcttctctcatatcttcctgcagttctctcagatcat 424
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaaagaacaaagactatatgctcttctctcatatcttcctgcagttctctcagatcat 624

                                                                       
Query: 425 tctagaagggctagcagggttgttcaagctgtcacctttcaataggacgctgacatctac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctagaagggctagcagggttgttcaagctgtcacctttcaataggacgctgacatctac 684

                                                                       
Query: 485 aaatgtatccagccacattcatgggaaatatgggacacatgggttcacaagctggacacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatgtatccagccacattcatgggaaatatgggacacatgggttcacaagctggacacc 744

                                                                       
Query: 545 tcccaaagccacgagcagggaacgcaatgccaaccatgtatgactcaaaataaacttggt 604
           || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctcaaagccacgagcagggaacacaatgccaaccatgtatgactcaaaataaacttggt 804

                                                                       
Query: 605 ttccagtggatacaaagaaaggatctgatgagccctgtctctgcttaccacatccaaccc 664
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttccagtggatgcaaagaaaggatctgatgagccctgtctctgcttaccacatccaaccc 864

            
Query: 665 t 665
           |
Sbjct: 865 t 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)