BAC Information

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BAC

Clone NameMSMg01-303P07
Chromosome5 (Build37)
Map Location 125,817,536 - 125,817,927
singlet/doubletsinglet
Overlap geneScarb1
Upstream geneSbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
Downstream geneUbc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303P07.T7 (MSMg01no303_p07.b1)MSMg01-303P07.TJ (MSMg01no303_p07.g1)
ACCAG429392AG429393
length812744
length of high quality
(start - end)
298 (38 - 335)392 (68 - 459)
definitionCHROMAT_FILE: MSMg01no303_p07.b1 PHD_FILE: MSMg01no303_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:59 2005CHROMAT_FILE: MSMg01no303_p07.g1 PHD_FILE: MSMg01no303_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATG
AGACTCTCTCTCAAAAACAAATTACAAAGTAAGGGCAGGAGAGATAGTTT
AGTGGTCCAGAGCACTGGATAATCTTCCAGATGGACCCAGGTTCAAGTCC
CAGCACCCAAATGGTGGCTCAAGACCATCTGTAATTCCAGTTCCAGGGGA
AGCCAACAGACTCTCTGGCCTCTGTAAGGACCAGGCACACCCACTGTACA
CAGACATATTCAAAAGCCCAATTAGCTGTTTTAGATTTATTTATTTATTT
ATTTATGTGATTACACTGTTGCTGTCTTTAGACACACAGTAAGAGGGCAT
GGGATCCCATTACAGATGGTTGTTTTCCCCTTTTCTCTTTTCCCTTTTTT
TAATTATCCCCCCTCCCTTCCTACTTACCTTTTTTCCCCCTTTCCTTTTC
CTTCCCTTTCCTCATTTCCCTATCATTTTTCTCATCCTTACAATTTAATT
ATTCACATATTTAACTTCTTACCCTCCCTTACCACTAATTTCAATTTCTT
CCTCACACTTCACATAATTTCCATTCATTTTACAATTTTTGTCTACCTCA
ATCTATTTCATATCAAATTATTTCTTTAATCCTCCCAACTTATACAAATA
CTGTTCTAATTCTCCCATCTAGTATAAAACGTTTCACTCCTCGACAACTN
ATTCCCCCGTTTCCCCTCCCCCCCTTTCTCTTCCCTTACCCCAATTTTGT
TTAACTTAACCTTCCATACCTCCCATATTACGTTACCATTATCTTTCTTT
TACCCGCACATN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTACTATTGCTCCCGCTGTCAAGCTGTGGGAC
CATCCACTTCGATGGCAATGAAGTGTCATTTCTAAACCCCATCACCCTCT
TTGGCTACCTGTGGTTTTGATTTCACATCTTCAGCGCCACAAGGTTGGGC
AGGAGGAACGTGATCCCCGTGTAGGTGACAGTTTTCAGAGCTCAGGGGCT
CAGGCCTACTGTACCATGTGCTAGCTGGAGCCGGTTCATCACTCAAGAGA
GCCAAGTTTTTCCCCCAGCAGTGAGACAGGGGTCAGATCTGGTTTGCTGT
CCCTGAGGGATTAGCAAGTTGCAAAGGAGATTACAAGCGGCCTTTGGAAA
TGCCCTGCGAGCTTGCCTGCTTCTGGACTCAATCTAACCACGCCAGCGTT
GTGAAACAGGCAGAGGCTGCGAATTCTTCCTCTCTACAGATAAGGGATCT
GGCCCATATCATAGGTCGGCAGCTGGTTATTAAACATGGTCTGTGGTGGG
CTGGGAGGGACTTTATGCGGTCATGCTCGGTTTATCTTCCACAGGGAAGT
ATCAAGTTAGCCTCAGTCCTCTCTTTCTGTACAGCGAGCTGCTGGCCTTT
CCCTGAACAGATTTAATAAACGTTCACGTTTTCGGAATATCCGTATGATA
AAAAAAGTCCTTCTTCCCCTAACCTCCTATTCGCTAACCCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_p07.g1 MSMg01no303_p07.g1 CHROMAT_FILE:
MSMg01no303_p07.g1 PHD_FILE: MSMg01no303_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:00 2005
         (392 letters)



>mm_chr5_125817336_125818127
          Length = 792

 Score =  743 bits (384), Expect = 0.0
 Identities = 390/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctactattgctcccgctgtcaagctgtgggaccatccacttcgatggcaatgaagtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tctactattgctcccgctgtcaagctgtgggaccatccacttcgatggcaatgaagtgtc 533

                                                                       
Query: 61  atttctaaaccccatcaccctctttggctacctgtggttttgatttcacatcttcagcgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atttctaaaccccatcaccctctttggctacctgtggttttgatttcacatcttcagcgc 473

                                                                       
Query: 121 cacaaggttgggcaggaggaacgtgatccccgtgtaggtgacagttttcagagctcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cacaaggttgggcaggaggaacgtgatccccgtgtaggtgacagttttcagagctcaggg 413

                                                                       
Query: 181 gctcaggcctactgtaccatgtgctagctggagccggttcatcactcaagagagccaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gctcaggcctactgtaccatgtgctagctggagccggttcatcactcaagagagccaagt 353

                                                                       
Query: 241 ttttcccccagcagtgagacaggggtcagatctggtttgctgtccctgagggattagcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttttcccccagcagtgagacaggggtcagatctggtttgctgtccctgagggattagcaa 293

                                                                       
Query: 301 gttgcaaaggagattacaagcggcctttggaaatgccctgcgagcttgcctgcttctgga 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 292 gttgcaaaggagattacaagcggcctttggaaatgccctgtgagcttgcctgcttctgga 233

                                           
Query: 361 ctcaatctaaccacgccagcgttgtgaaacag 392
           ||||||||||||||| ||||||||||||||||
Sbjct: 232 ctcaatctaaccacggcagcgttgtgaaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)