Query= MSMg01no304_b06.b1 MSMg01no304_b06.b1 CHROMAT_FILE:
MSMg01no304_b06.b1 PHD_FILE: MSMg01no304_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:14 2005
(764 letters)
>mm_chr5_122861261_122862424
Length = 1164
Score = 1373 bits (710), Expect = 0.0
Identities = 750/772 (97%), Gaps = 18/772 (2%)
Strand = Plus / Minus
Query: 1 taaaggcgtgcacacagccaagcacacagccaagccagactaggcttaaactagacgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 taaaggcgtgcacacagccaagcacacagccaagccagactaggcttaaactagacgtta 925
Query: 61 aaggctcagcacactgcgggtcacctgtgaactggagctgtggagccaaagcaaagtgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aaggctcagcacactgcgggtcacctgtgaactggagctgtggagccaaagcaaagtgga 865
Query: 121 aggccacagatgattcacctcagcactgacacagaacagatgtggcctggaaattacgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aggccacagatgattcacctcagcactgacacagaacagatgtggcctggaaattacgcc 805
Query: 181 ctcctaatggagtggtcaccctaacatctgtaaacacaaaggaactcattgctttcagcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctcctaatggagtggtcaccctaacatctgtaaacacaaaggaactcattgctttcagcg 745
Query: 241 tgagtttttctggactgaaagccaacttttttttttttttttaattattatgacttccag 300
|||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||
Sbjct: 744 tgagtttttctggactgaaagccaac--tttttttattttttaattattaagacttccag 687
Query: 301 tactaatagttcttaaaagaaggaaaaaaagtcagagtaaaagaattcaaatcactcttg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 686 tactaatagttcttaaaagaaggaaaaaaagtcagagtaaaagaattcaaatcaatcttg 627
Query: 361 tctgagtatttcgatgcactgtgatcttgctttacccgatgccaaggggcagcaattagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctgagtatttcgatgcactgtgatcttgctttacccgatgccaaggggcagcaattagt 567
Query: 421 acccgctaaagtgacgaatataaacaggatacttatgtgaaaaggataaggtgaccaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acccgctaaagtgacgaatataaacaggatacttatgtgaaaaggataaggtgaccaaat 507
Query: 481 ggccctttaaaaacatattgttattattattattattattattattattattagagagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggccctttaaaaacatattgttattattattattattattattattattattagagagct 447
Query: 541 gggaattcaacctaggaccttgtgcatactagtcaggtagtcaggttttctaacactggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gggaattcaacctaggaccttgtgcatactagtcaggtagtcaggttttctaacactggg 387
Query: 601 ctataaccccagtttcttttcttccttccttccttccttccttccttccttccttccttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctataaccccagtttcttttcttccttccttccttccttccttccttccttccttccttc 327
Query: 661 cttccttccttcctttctctctctctctctctctctctctctctctttgaaacaggatct 720
|| ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ct---ttc--tc---tctctctctctctctctctctctctctctctttgaaacaggatct 275
Query: 721 caagctgtaaccccag--------cttccctccttttttcttttttcttttt 764
|||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 274 caagctgtaaccccagtttccttccttccttccttttttcttttttcttttt 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 764
Length of database: 1164
Length adjustment: 10
Effective length of query: 754
Effective length of database: 1154
Effective search space: 870116
Effective search space used: 870116
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_b06.g1 MSMg01no304_b06.g1 CHROMAT_FILE:
MSMg01no304_b06.g1 PHD_FILE: MSMg01no304_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:14 2005
(725 letters)
>mm_chr5_122690165_122691289
Length = 1125
Score = 1379 bits (713), Expect = 0.0
Identities = 722/725 (99%)
Strand = Plus / Plus
Query: 1 cctccagtccatgttgaccccacgcctatagttccctcttcttggtcctttcagcttaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccagtccatgttgaccccacgcctatagttccctcttcttggtcctttcagcttaac 260
Query: 61 ttgggctcctccaagagccaggtccagtccctcctctgggcatcttgtgcctgctattgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggctcctccaagagccaggtccagtccctcctctgggcatcttgtgcctgctattgc 320
Query: 121 tgcccagggcccttttgaaagccactcgctcccatcagcagccagaatgccacttagctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcccagggcccttttgaaagccactcgctcccatcagcagccagaatgccacttagctg 380
Query: 181 tctgcagccccgggcctgggggaatgtagctcagaaggtcaccacccagtgtttgtctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcagccccgggcctgggggaatgtagctcagaaggtcaccacccagtgtttgtctgc 440
Query: 241 ttttacaataggaacaagaaattgagcggctcaacaagctgttgaaatagaatggacttc 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ttttacaataggaacaagaaattgagcggctcaacaagctgttgaaacagaatggacttc 500
Query: 301 tcggggacgtgaactagccttccagacgctccgcctggagtagctgggctgtggccagag 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tcggggacgtgaactagccttccagacactccgcctggagtagctgggctgtggccagag 560
Query: 361 agccagcctgtggtgcaaagtccagtctccatctctgccttggcttgcaccccgggatgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccagcctgtggtgcaaagtccagtctccatctctgccttggcttgcaccccgggatgc 620
Query: 421 tggggacacatcttcactggtactgctgtctccttggcgtccacgccctacgcttgcagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggggacacatcttcactggtactgctgtctccttggcgtccacgccctacgcttgcagc 680
Query: 481 aaagggatcatcgcaccaaccttttctcaagctggactccactgtcgctcaaaaatgatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagggatcatcgcaccaaccttttctcaagctggactccactgtcgctcaaaaatgatc 740
Query: 541 aaggaggctgggcttgtaaagccaacttaatgcacaccctgaaaggagctggagcccgca 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 aaggaggctgggcttgtaaagccaacttaatgcacatcctgaaaggagctggagcccgca 800
Query: 601 ccccgaaccagctcactctggaaaacctttctctactagaatgtccccagcttctcctgc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccccgaaccagctcactctggaaaacctttctctactagaatgtccccagcttctcctgc 860
Query: 661 tgcctccctaggggagccatcatggtacccagtccctcctctgcagcatccagctgtacc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgcctccctaggggagccatcatggtacccagtccctcctctgcagcatccagctgtacc 920
Query: 721 atcag 725
|||||
Sbjct: 921 atcag 925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1125
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1115
Effective search space: 797225
Effective search space used: 797225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
