BAC Information

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BAC

Clone NameMSMg01-304B12
Chromosome5 (Build37)
Map Location 71,363,689 - 71,364,391
singlet/doubletsinglet
Overlap geneGabra2
Upstream geneGabrg1
Downstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304B12.T7 (MSMg01no304_b12.b1)MSMg01-304B12.TJ (MSMg01no304_b12.g1)
ACCAG429490AG429491
length1,3131,280
length of high quality
(start - end)		705 (137 - 841)775 (91 - 865)
definitionCHROMAT_FILE: MSMg01no304_b12.b1 PHD_FILE: MSMg01no304_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:16 2005CHROMAT_FILE: MSMg01no304_b12.g1 PHD_FILE: MSMg01no304_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCATTTCNNNNNNNGATCACTGGGCGCTATAXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCCACTCAATATTTTATCCCTTCAATGCCTATTA
GGCAAACACAACTTTCAAATAAACTCTTAAATGTAATTAGAATGTCTATA
TCTTATAACTGAGAAAAAAAGATAGGTGTCTTAAACTCTACTATTAAATA
TTTGCAAGTGCAAACTGTAACATAGTTAGGAATTCCAAATCAAACCACAA
TAAAGATGTTCCAAATTTATGGAAAAATTTTATAATATAGTGTTCAATGA
TACTTTCCAAATATAAAAGTTTCTTTCAGTATTTGAAATATTTATATCAC
ATAAAAATATGTACAAAGTTGTTTCTTAAGGCGTATATCAATTGATAAAA
CTGGACAGCAAGGCACCTTTTTATCTATGCACAAATGTCTCGTTAGCCTC
AGTACTTGAAGTACGAAAAATATGTATCAACAATCAAAAGGATTAATATT
AAAGTGGATTTCCCCAATTAGAACATATGACCAAATTAACATCCTTAGAT
ATTTCAGTATTTACACGCTCATTTCATATTACATGAAAGAGGAAAATCCT
ACCTTCACCTTTACAACATAGTAATAGAGATATAGATACATGACGAGCCA
TTGAGCCATTGACATAGCCATGAAGTCTTCACTAGGTAAAATTAATGCAC
AAAGTTCTTTCATAATATATTTTTGGTGATCTAAAGACATGAGCTTTCTC
AGCAGACAGAACTAGGATCCAGTAAGCTTGTTGGTCAGTTGTATAAGCTG
GAACAAGTTAACACCTTTGATAAACTTAAGATTATTTGCTGTGGAAGATT
AGAATTAAGAAGAGGCCCTCCTTACTGCAGAGATTGAGGGAGGACATGTG
TGAACCCCCACAGTGCTATACACTGAACTCCAAAAAGGTGAGGAATAAAT
TTAAAATGNGTCCTGTTACAAAAACCCTTAAGGATCTTCCGCAAAAAAAC
CCCCGAAAATGGACTTAATTTCAATTTTTAAAGAAACCCCCCCACCACGG
AGGCGTAAAATTCTCTTAATAAAAAAAAGGGGGCCCCCCTTCCTGGTTTA
GTAAATTTTCCCTCCAAGCCATCTTTTTTGGTAAAATTCCCGGGGAAATC
CTTTGGCGAAAAAAAACCTAACAAAACTTTAACCCCCCGGGGGGGCAGCC
CTTTCGGGAATTCAGCACATTTCTAGGGATGTAAAATTGTCCCTTTCTAA
AAGGAAAATCCCTACATATTGGATAATCAAAATTTTGTAATTTTTCATGT
ACTAGTAAGAACA

NNCCCAATTTNNNNNNNNTTGAGGCGAGGCTGGGGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCACCTGAGGAATACC
GAATGGCAGAGAAGCACCTGACTAAATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCACAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
AGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCA
TTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTTCTACC
AGAGGATCCCACACTACATCTCCTGGGCATATATCTAGAAGATGTTCCAA
CTAGTAAGAAGGACACATGCTCCACTATGTTCATACCTATTTTCTTGCTT
ATTTTTTCCCTGTTTTTTTTTTGATTTTGAAAGCAGGGTTCCTCTGAGTA
TGTAGCCTAAATTAGAACTTGCTCTGTAGACTAGGGTGGCTTTGAGCTCA
CGAAGATCAACCTATATCTGCATCCTGAATGTATTTTTAAATTTTGAATC
CACTTTATACCTTTTTGTTGCCTACTTGCTAAAGATAAGATTTTTTTAGC
ACTCAATGAGATTGTGCAGTGGGCATCGTGTCTGCTTCCTAATTTCAAGC
TAGCTTTGCTAGCTTTTATTCATGGGTTTTAATGTTTATAGTAAGTTTGT
TATATACAGCCTTTACTATTTTTAGATATGTTCAATTGGTTCCTAATACT
TTTCAGACTTTCACCAAGGAGGCCTTTTGAACCTTGATGTATTACTTTTC
TAGGCATCAAATAATATGTTTATGTTGTTGCTGTGCTAAAATTTATTTAT
GTGGCATATTACATTTATTTGATTGCATATACTGAACAAACCGTACACTT
TCCTGATGGAAGACCCTTTGGTATGAAACACGGGACCTTGATGGACTTAT
AAAATTTTTAAAAAAGATTTATTGACCATTGGTTTTGAATCCCCCCCAAA
AAGGGTTAAACCTTAATTTCTAATCCTTTGCTCTTCCCANTTAGAAAAGG
GAAAGGTTGAGGCCCCCACCAACCTTTTATGGGTTTCCCCTCCCCCCGGG
GAATTAAAAATAAATTTTTCTTATCTTTTTAATTTTGGGGGCTTTTCCCC
CCTTCCGTGTTTATGAAAGGAGGAATTCTCCTTTCTGGTGGAGTATCAAA
ATACAGTTAGTGTTCCTATCTTATCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_b12.b1 MSMg01no304_b12.b1 CHROMAT_FILE:
MSMg01no304_b12.b1 PHD_FILE: MSMg01no304_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:16 2005
         (705 letters)



>mm_chr5_71363489_71364594
          Length = 1106

 Score = 1284 bits (664), Expect = 0.0
 Identities = 694/704 (98%), Gaps = 3/704 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaatgtctatatcttataactgagaaaaaaagataggtgtcttaaactctactatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaatgtctatatcttataactgagaaaaaaagataggtgtcttaaactctactatta 260

                                                                       
Query: 61  aatatttgcaagtgcaaactgtaacatagttaggaattccaaatcaaaccacaataaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatttgcaagtgcaaactgtaacatagttaggaattccaaatcaaaccacaataaaga 320

                                                                       
Query: 121 tgttccaaatttatggaaaaattttataatatagtgttcaatgatactttccaaatataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttccaaatttatggaaaaattttataatatagtgttcaatgatactttccaaatataa 380

                                                                       
Query: 181 aagtttctttcagtatttgaaatatttatatcacataaaaatatgtacaaagttgtttct 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 aagtttctttcagtatttgaaatatttatatcacataaagatatgtacaaagttgtttct 440

                                                                       
Query: 241 taaggcgtatatcaattgataaaactggacagcaaggcacctttttatctatgcacaaat 300
           |||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 441 taaggcatatatcaattgataaaactggacagcaaggcaccagtttatctatgcacaaat 500

                                                                       
Query: 301 gtctcgttagcctcagtacttgaagtacg-aaaaatatgtatcaacaatcaaaaggatta 359
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 501 gtctcgttagcctcagtacttgaagtacgaaaaaatatgtatcaataatcaaaaggatta 560

                                                                       
Query: 360 atattaaag-tggatttccccaattagaacatatgaccaaattaacatccttagatattt 418
           ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 atattaaagttgg-tttccccaattagaacatatgaccaaattaacatccttggatattt 619

                                                                       
Query: 419 cagtatttacacgctcatttcatattacatgaaagaggaaaatcctaccttcacctttac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagtatttacacgctcatttcatattacatgaaagaggaaaatcctaccttcacctttac 679

                                                                       
Query: 479 aacatagtaatagagatatagatacatgacgagccattgagccattgacatagccatgaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacatagtaatagagatatagatacatgacgagccattgagccattgacatagccatgaa 739

                                                                       
Query: 539 gtcttcactaggtaaaattaatgcacaaagttctttcataatatatttttggtgatctaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtcttcactaggtaaaattaatgcacaaagttctttcataatatatttttggtgatctaa 799

                                                                       
Query: 599 agacatgagctttctcagcagacagaactaggatccagtaagcttgttggtcagttgtat 658
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 800 agacatgagctttctcagcagacagaactaggatccagtaagcttgctggtcagttgtat 859

                                                       
Query: 659 aagctggaacaagttaacacctttgataaacttaagattatttg 702
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aagctggaacaagttaacacctttgataaacttaagattatttg 903


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1106
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1096
Effective search space:   761720
Effective search space used:   761720
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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