BAC Information

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BAC

Clone NameMSMg01-304G21
Chromosome5 (Build37)
Map Location 140,712,897 - 140,713,540
singlet/doubletsinglet
Overlap geneMad1l1
Upstream geneUnc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270
Downstream geneFtsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304G21.T7 (MSMg01no304_g21.b1)MSMg01-304G21.TJ (MSMg01no304_g21.g1)
ACCAG429713AG429714
length1,2181,273
length of high quality
(start - end)		647 (87 - 733)649 (80 - 728)
definitionCHROMAT_FILE: MSMg01no304_g21.b1 PHD_FILE: MSMg01no304_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:03 2005CHROMAT_FILE: MSMg01no304_g21.g1 PHD_FILE: MSMg01no304_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCGGCTTTTNNNNNAACATTGGGCGCTATAGACTCCTATGGGAGAGGAT
CCGCGGAATTCCAGTACCAATGATAAGCATTGAGCTCAGAGACCCTACCC
CTCCCTGAGGAGCTAATGCGCAGTGCAAGTCTGTTGAAGGGTAGAAGAGA
GTCAGTTTCTAAGTGGGATAGCTTCAGGTAAGGTGCCCTTGCCCAAGTGT
AAAATCCCACCCATGTTCAGTAAGCAACCCTAACTAAATGCAGTGAGACA
CACAAAAAGGCATACAGGAGGAAAGAAAAGGCAAAGGACAGGGTGAAAGT
AAAAGGGTTTTGGGGAGGGAGTCAGCATAATGGGGAGATTGGGCCAAAGC
ATATCACGTAAGACTAAAATGGTCAAAGAATACAAGTGTTTAAGCCGTGT
ACTCATTACAAGGAAGAACACACAGAGGCCGCTCCAAGCAATGGTAAATT
ATGAATGGTTCCAGTCCTTCCACCATTGAGCACTTCAGTGGCTGCTGAAG
GCTCCATCCTAGATCACTGCCAAATCAATTTGGCTTTCACGAGCCAGGTG
ACTATTCCATTGCCTACAAACTCTTTATAGCTCTCTGGTCCCAGACTAAT
TATTCCACATCTCTGTCACTGAATGGTGACTGTCAGCAGACACTCAATCA
CTTCTCATCACACCAAATGGCTCTCCTCAAAGTCTGGCAGGCCATTCACA
AGGCACAGTGCTGGTCACTTCCAGGACATGNNNNNGNNCTTTGCNTNATT
AACAATANCCTTTCTTCTTATGACTCTTTACTTCTCTTCTTATTTTTTTC
CCAAATTCAAACAATTTATCTNTAAATATATTTTCCTCCCTCCTCTATTA
TTCTATTTTATTCATCCATTTTTTTTTTACTAACCCTAATTCCNCCNNAA
ACCCAATATTTTATTTTCTATTTTCTTCCTAACTTTTATTCTTTTTTTAT
ATTTTTATTTCACATATTTTCTTTATATCATTATTTCTATTACATCTTAT
TATATCTATTTATTTTTCACTTCTTTTTATCTTCTCTATATTTCTACTTT
ATCACTTATTATAATTTTTTTTATTCTATCTATTTCCTCTTAATTATACT
TATTAAATTATNTTTTTCTATTCTATTATACTTTCATTATTTACTCTTTA
CTCTTACNCTACTATTTATCTTTATTAAAAATTTCTCTCCTTCTTTAATC
TTATTTATTTATTATCTT

NNCCCCCTTCTTTTTNNAAGCATGGATGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTAAACCTTTGGAAGAGC
AGTTGATGCTCTTACCTGCTGCCTCATCTTGCCAGCCCTGCCCTGCAATT
CTTATGTTATTACTATTTTGAACTGAAGCTGTCATCTGAAGTTGGTTTGT
CTCTTAGGAAAACCCGACCTTCGATGTCCTTTGTTTTGTTGAGGTAGGGT
CTTACTTTGTAGCTTAGGCTAACTTTAAAATATATATATATATATTGTGG
GGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCTAGAGACTGCAGCTAAGTC
ATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTGAGTGC
TGCGCAGGTGCACCAGGATTCAGGTGAATCCAATTTGGTGGAGATTTGCC
CCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGTGGCGTGGCC
TGCTGTGCGTGGATGGGAACTGAGAGTATATAAGAGTGAGAGGCCCGGGT
TAGAGGGAGGATTATTATTCGAGAGAGGATTGTTATTATTGGGAGATATA
AACAAGGGAGATATAAACAAGAAGAAATAGGACTGAATAAACGTGTGCAG
AAGGATCCTGTAGCAGCGTCGTTCTTGCTGGCGAGTTGGGGGCGCGCTCG
AAAATATATGTGTGTGTGTGTGTGTGCGTGTGTGTGTTTTNTNNTCTTTT
NTTTNTTTTTTNTTTTTTTCTTCTTTGTTTTCTTNTTTTTTTTTTTTTTT
CTTCTCTCTCTTCCTCTGTCTTTCTTTCTCTCCTTCCTTTTCTTCCTTTT
TTTTCCTCCTCCCCCCCTCTCTTCTTTTTTTTTTCCTTTTCTTCCTTTCC
TCTTCTCCTCCTCTTCTTTTCTCTCTCTTCGTTTTATTCTTTTTCTTTTT
TTTTATCTACCCTTTTTCTTTTTCTCTTTTCTTCTCTCCCTTTTCTTTTC
TTTACACATCTTCTTTTTCATTACTTCTCTAATATCTATTTATTTCTTCN
TCTTCAATTTCTTCTTTATTTTTTTTTTCCATTTTCCCTCAACCTTACTA
ATCTTACTTTTCCTCCTTTCTATTCTTTATTTCCTCCTATTCTTCTCTTT
TTACCTTCTCTCTCATTTCTTCTATTCTCTTTTTCTTANTTCACACTTTN
CTTTTTCTCCTTATATCTTATTCTATCCTTTTTTATCTCCTAATCTATCT
CTTTTAATTTCATTTTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_g21.b1 MSMg01no304_g21.b1 CHROMAT_FILE:
MSMg01no304_g21.b1 PHD_FILE: MSMg01no304_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:03 2005
         (647 letters)



>mm_chr5_140712697_140713743
          Length = 1047

 Score = 1222 bits (632), Expect = 0.0
 Identities = 641/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaccctacccctccctgaggagctaatgcgcagtgcaagtctgttgaagggtagaa 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cagagaccctacccctccctgaggagctaatgggcagtgcaagtctgttgaagggtagaa 260

                                                                       
Query: 61  gagagtcagtttctaagtgggatagcttcaggtaaggtgcccttgcccaagtgtaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gagagtcagtttctaagtgggatagcttcaggtaaggtgcccttgcccaagtgtataatc 320

                                                                       
Query: 121 ccacccatgttcagtaagcaaccctaactaaatgcagtgagacacacaaaaaggcataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacccatgttcagtaagcaaccctaactaaatgcagtgagacacacaaaaaggcataca 380

                                                                       
Query: 181 ggaggaaagaaaaggcaaaggacagggtgaaagtaaaagggttttggggagggagtcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggaaagaaaaggcaaaggacagggtgaaagtaaaagggttttggggagggagtcagc 440

                                                                       
Query: 241 ataatggggagattgggccaaagcatatcacgtaagactaaaatggtcaaagaatacaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataatggggagattgggccaaagcatatcacgtaagactaaaatggtcaaagaatacaag 500

                                                                       
Query: 301 tgtttaagccgtgtactcattacaaggaagaacacacagaggccgctccaagcaatggta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tgtttaagccgtgtactcattacaaggaagaacacacagaggccgctccaagcaatggca 560

                                                                       
Query: 361 aattatgaatggttccagtccttccaccattgagcacttcagtggctgctgaaggctcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattatgaatggttccagtccttccaccattgagcacttcagtggctgctgaaggctcca 620

                                                                       
Query: 421 tcctagatcactgccaaatcaatttggctttcacgagccaggtgactattccattgccta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctagatcactgccaaatcaatttggctttcacgagccaggtgactattccattgccta 680

                                                                       
Query: 481 caaactctttatagctctctggtcccagactaattattccacatctctgtcactgaatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaactctttatagctctctggtcccagactaattattccacatctctgtcactgaatgg 740

                                                                       
Query: 541 tgactgtcagcagacactcaatcacttctcatcacaccaaatggctctcctcaaagtctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgactgtcagcagacactcaatcacttctcatcacaccaaatggctctcctcaaagtctg 800

                                                       
Query: 601 gcaggccattcacaaggcacagtgctggtcacttccaggacatg 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcaggccattcacaaggcacagtgctggtcacttccaggacatg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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