BAC Information

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BAC

Clone NameMSMg01-304L24
Chromosome5 (Build37)
Map Location 41,561,860 - 41,562,620
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304L24.T7 (MSMg01no304_l24.b1)MSMg01-304L24.TJ (MSMg01no304_l24.g1)
ACCAG429936AG429937
length1,2301,254
length of high quality
(start - end)
707 (91 - 797)761 (89 - 849)
definitionCHROMAT_FILE: MSMg01no304_l24.b1 PHD_FILE: MSMg01no304_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:48 2005CHROMAT_FILE: MSMg01no304_l24.g1 PHD_FILE: MSMg01no304_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGGTTANNNNNNAATCATTGGGCGCTAAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCTTTGTTCAGTTCTGACCCTTAATTTTTAATGGGGTTAT
TTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATT
AGTCCCCTATCTGATTTAGGATAGGTAAATATCCTTTCCCAATCTGTTGG
TGGCCTTTTTGTTTTATTTACGGTGTCTTTTGCCTTACAGAAGCTTTGCA
GTTTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGTGCAAGCCATT
GCTGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCGTCATCCTGAGCGAGGTAACACAATCA
CAAAGAAACTCACACAATATTTACTCACTGATAAGTGGATATTAACCCAA
AACTTAGGATACACAAGATATAAGATACAATTTGCTAAACACATGAAACT
CAAGAAGAATGAAGACCAAAGTGTGGACACTGTGCCCCTTCTTAGAATTG
GGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTCTG
ATGAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGATCCACCCCAT
AATCAGCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCT
GAAAGGACCCTGATATAGCTGTCTCTTGTGAGATGATGCCAGGGCCTAGC
AAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCT
CCCAATGGAGGAGCTAGAGAAAGTACCCAAAGAGCTAAAGGGATCTGCAA
CCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTTGA
GTCTCTAGCTGCATATGTATCAGAACATAACCTAGTCGGCCATCACTGGA
AAGAGAGGCCCATTGGACACACAAAACTTTATATGCCCCAGTACAGGGGA
ATGCCCAGGCCCAAAAATGGAATTGGTTGTGAAGGAAAATGGGAAATAAA
GTATTGGGGCTCTTTTTCTAATAACCTTCAACCCCTTCTTGTTCATCATC
TTTCCCTTCACTTATCCTGATTTTAATAAACTCTTATCCCTATTTCTCTT
CTTTTTATAAACTTCTTTCCTTAAACTATCTTTTCCCCACCTTTTCTCCA
TCTCACAATTATTCTTCTCTTTCTTTCCTT
NCCCGTGTTTNNNNNNACTGAAGCGTAGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATACCCTGCCCTTGCCAGT
TCCCAGATGTTAAAGCCCTTTACTTATACATATATTTTGGTAAGCTTATT
GACAAGTGATTAAACTGTATTATTGGAGAAGGTGTAAATACTGGGAGTGA
TTCTGATGACAACCCACAGGCACTCCCATTTAATTATCTTCTTAGTCATT
TCAGAATATAAAGGCCAATCTCTTGTATATTGTTAGTCATCATAGATTGA
AGATACACTTAGGCTTTGAACCACAAAATGATATACGTTTCACTTTATCT
TTTCTGAAGTACAAAACAACCCCCCAGGTTAAACATGTTGATGGATGTTA
TTTAAGTCACCAAAGTTGTTTTTTAGTTTGTTTTATTTTTTCTTTATTGG
ATATTTTCTTTATTTACATCTCAAATGGAAAGGAAGCCCTTTCCAGGTCT
CCCCTTCAGAAAACCCCTATCCCATCCCCGTTCTCCCTGCCTCTATAAGG
GTTCTTCCCTCCCACCCACCCATTCCCATCTTCCTGCATTGGCATTTCCC
TACATTGGGGACACTGAACACCTTCAGGCCCAAGCGCCTGTCCTTCCATT
GATGTCCAACAAGGCCATCCTCTGCTAAATATGCAGCCAGTGCCATGGGT
ACCTCCATGTGGATTCTTTGGTTGGTGGTCCAGTCCCCAGGAGCTCTGGG
GGTGGGGTGGGGGTCTGGNCTGTTGACACTGTTGTTCCCTCCATGGAGCT
GCAAACCCCCTCAGATCTTTTTTTTTTAATTAGGTATTTTCTTTATATAC
ATTTCAAATTTCAAATGCTATCCCAAAAGTACTCTATATCCTCCCCTGCC
CTGTTCCCCAACCCACCACTCCTGCTTCTTGNCCCTGNCATTCCCCTGTA
CTGGGGCATAATAAGTTTGCAATACCAAGGGGCCTCTCCTTCCCCGGAAG
GGCCGAATAAAACCTCTTTTTGTTAAATTATGGGCTTTAAACAAAACTAA
AAACACCCCAAAAAACATTTTTCCAAAACCCAAAAAATTCCCCAAAAAGG
AAGGCCCCGGTGAGGGACCCCTCTTTCCTCCCTTTAAAAAAAAAAAAAAT
ACCCCCCCCCCCCTTTCCCGAAAAAAAAATCTTTGNTTTTTTTATGAAGG
GGGATTATTTATCCTAAGAAACACCCCCCGCGGGGAGCCTCTTCTACAAG
ACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_l24.g1 MSMg01no304_l24.g1 CHROMAT_FILE:
MSMg01no304_l24.g1 PHD_FILE: MSMg01no304_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:48 2005
         (761 letters)



>mm_chr5_41561660_41562820
          Length = 1161

 Score = 1346 bits (696), Expect = 0.0
 Identities = 745/763 (97%), Gaps = 4/763 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcccttgccagttcccagatgttaaagcc--ctttacttatacatatattttggtaagct 58
           |||||||||||| ||||||||||||||||  |  |||||||| |||||||||||||||||
Sbjct: 201 gcccttgccagtgcccagatgttaaagccagc--tacttatagatatattttggtaagct 258

                                                                       
Query: 59  tattgacaagtgattaaactgtattattggagaaggtgtaaatactgggagtgattctga 118
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 259 tattgacaagtgattaagctgtattattggagaaggtgtaaatactgggaatgattctga 318

                                                                       
Query: 119 tgacaacccacaggcactcccatttaattatcttcttagtcatttcagaatataaaggcc 178
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 319 tgacaacccacaggcactcccatttaattatcttcttattcattttagaatataaaggcc 378

                                                                       
Query: 179 aatctcttgtatattgttagtcatcatagattgaagatacacttaggctttgaaccacaa 238
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatcacttgtacattgttagtcatcatagattgaagatacacttaggctttgaaccacaa 438

                                                                       
Query: 239 aatgatatacgtttcactttatcttttctgaagtacaaaacaaccccccaggttaaacat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgatatacgtttcactttatcttttctgaagtacaaaacaaccccccaggttaaacat 498

                                                                       
Query: 299 gttgatggatgttatttaagtcaccaaagttgttttttagtttgttttattttttcttta 358
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 gatgatggatgttatttaagtcaccaaagttgttctttagtttgttttattttttcttta 558

                                                                       
Query: 359 ttggatattttctttatttacatctcaaatggaaaggaagccctttccaggtctcccctt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttggatattttctttatttacatctcaaatggaaaggaagccctttccaggtctcccctt 618

                                                                       
Query: 419 cagaaaacccctatcccatccccgttctccctgcctctataagggttcttccctcccacc 478
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagaaaacccctatcccatccctgttctccctgcctctataagggttcttccctcccacc 678

                                                                       
Query: 479 cacccattcccatcttcctgcattggcatttccctacattggggacactgaacaccttca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cacccattcccatcttcctgcattggcatttccctacattggggacactgaacaccttca 738

                                                                       
Query: 539 ggcccaagcgcctgtccttccattgatgtccaacaaggccatcctctgctaaatatgcag 598
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 739 ggcccaagcgcctgtccttccattgatgtccaacaaggccatcctctgctgaatatgcag 798

                                                                       
Query: 599 ccagtgccatgggtacctccatgtggattctttggttggtggtccagtccccaggagctc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ccagtgccatgggtacctccatgtggattctttggttggtggtccagtccccaggagctc 858

                                                                       
Query: 659 tgggggtggggtgggggtctggnctgttgacactgttgttccctccatggagctgcaaac 718
           |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 859 tgggggtggggtgggggtctggcctgttgactctgttgttccctccatggagctgcaaac 918

                                                      
Query: 719 cccctcagatcttttttttttaattaggtattttctttatata 761
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 cccctcagatcttttttttttaattaggtattttctttatata 961


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 761
Length of database: 1161
Length adjustment: 10
Effective length of query: 751
Effective length of database: 1151
Effective search space:   864401
Effective search space used:   864401
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)