BAC Information

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BAC

Clone NameMSMg01-304N24
Chromosome5 (Build37)
Map Location 55,311,093 - 55,311,803
singlet/doubletsinglet
Overlap genenone
Upstream geneStim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304N24.T7 (MSMg01no304_n24.b1)MSMg01-304N24.TJ (MSMg01no304_n24.g1)
ACCAG430023AG430024
length1,1911,266
length of high quality
(start - end)
621 (136 - 756)712 (134 - 845)
definitionCHROMAT_FILE: MSMg01no304_n24.b1 PHD_FILE: MSMg01no304_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:05 2005CHROMAT_FILE: MSMg01no304_n24.g1 PHD_FILE: MSMg01no304_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGGTCCNNNNNNNGCCATTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCAGTAAGAATGTTACCTCTTTTAGAACCTTACAATTC
ACTTCTAGNAGAGATGGNGAACATAAACAGGCCTTACTATTTATTTGAAT
AGAGCTAGAAAAGCTCAGGGCTAGTCTGCACAGTAATTACTTAGGACAAT
AGCTGAGTCACACCCAAACACAGGAATACACAATGTCCTAGCAAAAGGAA
GAGTTAGTGGAAGGGAATTCCCCTGGTGCAGGTTTCTTCACTAGGCCCAG
AGGAATAGTTTAATCGGGTATTTACTAAAGAACCCCTGGTGGTGGGTTTA
ACAATAGACTAGCATTGCATCAGAGCATTCACCTGGCTCCTGTGTTTAGC
TGATCTTTTTAATTAAGGGTTGATCCTATTCTGAGTGGTAAAGGCAGCCA
GGCTCCTGCCATCTTTTTATGTTTGCATTCTTTTTTTGTTGTTGTTTTGT
GTCACTATAACTTGGCTGATGTGTTTGCCTGGCTTTTCTTGTTTTTCTTC
TGTATTAAAAGTCTGGTGTTCACAATATGAACCCCAGAGCTCCTGTCTCT
AGCCGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGAGA
GGGCCCTTGGTCTTGCAAACTTTATATGCTCCAGTACAGGGGAACACCGG
GCCAAGAAGCTGGAGTGGGTGGGTTGCGGAGCAGGGTGGGGGAGGGTATA
GGGGACTTTAGGATAGNATTTGAATGTATTTTATTTTTTGGTTAATATAA
AATCTTTTAAAAGTGAAAATTGGAGACAAAATGAAAGGCTGGTGATCATT
TGGACCATTTATTTCCCATCTCCCTATCAATTTTTTCTTGCGTTCATGCT
GTTTGCCATTTCCTCCGACTCTGGATACCTGGCATCCAATTCCTTTCCCT
CCCACTGGGACCGCCATCGCTTGCCCTGGGATTTACTGTTTTATGTGGAC
GAGGTCACTCTCATTCTCCACCCTGGCTTCCTCTTTCAATGATATTTTCC
TTCCCTTCTTCTCCTACTATTCTCCCTCTACTTCTTTTTTTCTCACCCTG
GTAATTTCCCTATACTCCACATCCATTCCTTCTCCTCCCTTCTTTTTCCT
CTTACTCCCCCCCTCCTCCAATCTCTCTCATTCTTTCTCTT
NCCAGTATTNNNNNNACTGATGCGATGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAATTTCCAATATTGCAGA
ATCTAAAACCACTTACTACTTTACTGCAATTAGCCTGGTTTGAATAACCT
CTGTAAAACACTGTATTACAGTAACTGTTTCAAAAGAAAAGACTTCTTGC
TCCCACCTTGCAGAATTTGGGAGCTGATTATGTTTAACTTGACTGATTTC
ATTCAAGAGTGGAAATGTCTAAAAATATGATTTTTCTATTTAAAATGAAA
TATCATAGACATTTAAATTATTTACAAATAGAGGCAGGTGGCAGGTGTCT
GCTGTAAGATACAAAAAGAAGGAAAACCTCCACTAATTAAAGGGTTTTGT
ATTTCTAATTAGTGATTATTACTTCAGAATTATGGGTAACGAGACTTCAG
TAAAAAAACAAAAAATAATTGATAACCATTAGCATTAAAAAAAAGCTAAT
CTTGTAGATGGTGAACCTTCATAACACACTAAATGCAAGGGAAACAGCAA
ACAGAAACATGACAGAAATCTGCAGGACACTGCTGAATTCAACACTGGAG
GTATGGAGACAGCTCAGCTTCTCCTACAGTAATTTAATTTGTGGGAAGAA
AATTATGATGTGTAATGTCTTGCCTTTAGTCTCAATAGTCTGAAATATTT
AGAAAGTAACAAGTGATGTTGCAAAACTGGCATGAATAAGGCAGTTTACC
CATTTTCCTAATTACATAACTGGATGCACCAGGATATTTTACTTATGAGT
GGAGTAGAACAAATTATTTTTATTAAAGTTCAATAATTTTCCTGGCAGTG
GTGGCACACGCCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGGTGGATT
TCTGAGTTCGAAGCCAGCCTGNTCTACAGAGTGAGTTCCAGGACACCCAG
AGCTACCCAGAAAAACCCTGTCCTCAAAAACCAAAATTAATTATATACTT
AAAAAAATTACTGCCCCCTAATGAATAGAATTTTGAAATGAGAACTGTGA
ACAGGGGATTTTTCCTGGCTTTTCCGCGGGATTTATTTTGGAAACTCCTG
AATTTGTTCCTTGAAAAAAAGAATTTCTCTTTAAATTTTTTAAAAAAAAG
GGCCTCCCTTTTTTTTTCACCCCATGGCGCGCGAACTTTCTCCAATTTAC
TCTCTCCACAATATTCTCTTTTCTTCTGTAACCATTTGTTCTGCCGCGTC
CCAAAAAAATTATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_n24.g1 MSMg01no304_n24.g1 CHROMAT_FILE:
MSMg01no304_n24.g1 PHD_FILE: MSMg01no304_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:05 2005
         (712 letters)



>mm_chr5_55310893_55312003
          Length = 1111

 Score = 1338 bits (692), Expect = 0.0
 Identities = 707/712 (99%), Gaps = 1/712 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggtttgaataacctctgtaaaacactgtattacagtaactgtttcaaaagaaaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggtttgaataacctctgtaaaacactgtattacagtaactgtttcaaaagaaaagac 260

                                                                       
Query: 61  ttcttgctcccaccttgcagaatttgggagctgattatgtttaacttgactgatttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttgctcccaccttgcagaatttgggagctgattatgtttaacttgactgatttcatt 320

                                                                       
Query: 121 caagagtggaaatgtctaaaaatatgatttttctatttaaaatgaaatatcatagacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagagtggaaatgtctaaaaatatgatttttctatttaaaatgaaatatcatagacatt 380

                                                                       
Query: 181 taaattatttacaaatagaggcaggtggcaggtgtctgctgtaagatacaaaaagaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaattatttacaaatagaggcaggtggcaggtgtctgctgtaagatacaaaaagaagga 440

                                                                       
Query: 241 aaacctccactaattaaagggttttgtatttctaattagtgattattacttcagaattat 300
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 441 aaacctccactaattaaagggttttgtatttctaaggagtgattattacttcagaattat 500

                                                                       
Query: 301 gggtaacgagacttcagtaaaaaaacaaaaaataattgataaccattagcattaaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtaacgagacttcagtaaaaaaacaaaaaataattgataaccattagcattaaaaaaa 560

                                                                       
Query: 361 agctaatcttgtagatggtgaaccttcataacacactaaatgcaagggaaacagcaaaca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 -gctaatcttgtagatggtgaaccttcataacacactaaatgcaagggaaacaggaaaca 619

                                                                       
Query: 421 gaaacatgacagaaatctgcaggacactgctgaattcaacactggaggtatggagacagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaaacatgacagaaatctgcaggacactgctgaattcaacactggaggtatggagacagc 679

                                                                       
Query: 481 tcagcttctcctacagtaatttaatttgtgggaagaaaattatgatgtgtaatgtcttgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcagcttctcctacagtaatttaatttgtgggaagaaaattatgatgtgtaatgtcttgc 739

                                                                       
Query: 541 ctttagtctcaatagtctgaaatatttagaaagtaacaagtgatgttgcaaaactggcat 600
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 740 ctttagtctcaatagtctgaaatatttagaaaataacaagtgatgttgcaaaactggcat 799

                                                                       
Query: 601 gaataaggcagtttacccattttcctaattacataactggatgcaccaggatattttact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaataaggcagtttacccattttcctaattacataactggatgcaccaggatattttact 859

                                                               
Query: 661 tatgagtggagtagaacaaattatttttattaaagttcaataattttcctgg 712
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tatgagtggagtagaacaaattatttttattaaagttcaataattttcctgg 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1111
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1101
Effective search space:   772902
Effective search space used:   772902
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)