Query= MSMg01no304_o06.b1 MSMg01no304_o06.b1 CHROMAT_FILE:
MSMg01no304_o06.b1 PHD_FILE: MSMg01no304_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:07 2005
(761 letters)
>mm_chr5_150819403_150820563
Length = 1161
Score = 1427 bits (738), Expect = 0.0
Identities = 756/762 (99%), Gaps = 2/762 (0%)
Strand = Plus / Minus
Query: 1 tttatttatcacgtaatgaagttggttcttctgcctttttaagaagtgagttaaatttct 60
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 961 tttatttatcacgtaatgaagttggttcttctgccattttaagaagtgacttaaatttct 902
Query: 61 ttcaatgctctcccttgatacaggacc-aaggaaaaggaatcaggaaaagaaatgctcga 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 901 ttcaatgctctcccttgatacaggaccaaaggaaaaggaatcaggaaaagaaatgctcga 842
Query: 120 agatcttctcttaggtttaaagaaacttttgttgttattgttgttcactgaacttgaggt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agatcttctcttaggtttaaagaaacttttgttgttattgttgttcactgaacttgaggt 782
Query: 180 cttttaagatagcctccacaactccctccccaacctccccaaacaaagaaactccaacaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cttttaagatagcctccacaactccctccccaacctccccaaacaaagaaactccaacaa 722
Query: 240 aacaaaaaacaaccccccccactgtcacttaaaaaacccccaccctgttgattaaatgac 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aacaaaaaacaa-cccccccactgtcacttaaaaaacccccaccctgttgattaaatgac 663
Query: 300 cctatatttgtgttctgccaagatgacggacgctgagatctggtgttaaagtctaaagca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cctatatttgtgttctgccaagatgacggacgctgagatctggtgttaaagtctaaagca 603
Query: 360 taaactctaaaatgcaactaagtaccattaattggccaccacaaggcaatatttgaagtt 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 602 taaactctaaaatgcaactaaataccattaattggccaccacaaggcaatatttgaagtt 543
Query: 420 taaatatatctcccacaaggatatatcttcagagaaagaaaacggtgtctagacttcaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taaatatatctcccacaaggatatatcttcagagaaagaaaacggtgtctagacttcaaa 483
Query: 480 gaatttagtttagaattctgcattaatatcaaaggccaagcttaatatcttctgaaattg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaatttagtttagaattctgcattaatatcaaaggccaagcttaatatcttctgaaattg 423
Query: 540 caaaagccagctcatcggttcccaccagggccgctcagagttaatctttgaaatgttagc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caaaagccagctcatcggttcccaccagggccgctcagagttaatctttgaaatgttagc 363
Query: 600 ccaggaagagtccgaattcaacaactataaataataattaagacctcctccagctcatta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccaggaagagtccgaattcaacaactataaataataattaagacctcctccagctcatta 303
Query: 660 ctgacatttgaaggcagaaagcctgagcgtttggatgtgtttgtggttaatgcattttaa 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctgacatttgaaggcagaaagcctgagcgtttggatgtgtttgtggttaatgcattttaa 243
Query: 720 atctgcccggcgtcctggggggtgcacgctgacctttgacct 761
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 242 atctgcccggcatcctggggggtgcacgctgacctttgacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 761
Length of database: 1161
Length adjustment: 10
Effective length of query: 751
Effective length of database: 1151
Effective search space: 864401
Effective search space used: 864401
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_o06.g1 MSMg01no304_o06.g1 CHROMAT_FILE:
MSMg01no304_o06.g1 PHD_FILE: MSMg01no304_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:08 2005
(492 letters)
>mm_chr5_150646200_150647091
Length = 892
Score = 855 bits (442), Expect = 0.0
Identities = 480/493 (97%), Gaps = 2/493 (0%)
Strand = Plus / Plus
Query: 1 tgactacagtagatgtcagaaccagctccca-cctagaagtctacctgtcctggaacggg 59
||||||||||||||||||||||||||||||| || || |||||||||||||||||||| |
Sbjct: 201 tgactacagtagatgtcagaaccagctcccagcc-aggagtctacctgtcctggaacgcg 259
Query: 60 tgaccacgtcaggacaccatcccgcctgaagtcttcagtcatgcagataaagcatcccta 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgaccacgtcaggacaccatcccacctgaagtcttcagtcatgcagataaagcatcccta 319
Query: 120 acgcctcagagcgagccaatgggaagcatctaccccaaaatgtttacaaggtccctgtcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acgcctcagagcgagccaatgggaagcatctaccccaaaatgtttacaaggtccctgtcc 379
Query: 180 acaagaaataaagtgcatgagttatttcactaagaatcgtctgagttcttttaaggctga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acaagaaataaagtgcatgagttatttcactaagaatcgtctgagttcttttaaggctga 439
Query: 240 ggcttgctagttcggtgggatttatattaatagagaatgcttcggtgtttgggattctgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcttgctagttcggtgggatttatattaatagagaatgcttcggtgtttgggattctgg 499
Query: 300 ctccttcttggagtcctgagaagaatgtgaggccgagtttgtttttgcaacagaattgag 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 ctccttcttggagtcctgagaagaatgggaggccgagtttgtttttgcaacagaattgag 559
Query: 360 agcatcggaaagctgtggccaggtggagggttggcgggggctttggagttagttttgtgg 419
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agcatcgaaaagctgtggcaaggtggagggttggcgggggctttggagttagttttgtgg 619
Query: 420 ggttttgtctatgcttttggtanatttttgggtcttttggctggggatcggtaggataga 479
|||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| |||
Sbjct: 620 ggttttgtctatgcttttggtagattttggggtcttttggctggggatcgggaggaaaga 679
Query: 480 cttctctctccga 492
| |||||||||||
Sbjct: 680 cgtctctctccga 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
