BAC Information

Click to search

BAC

Clone NameMSMg01-305A23
Chromosome5 (Build37)
Map Location 8,157,433 - 8,157,822
singlet/doubletsinglet
Overlap geneAdam22
Upstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840
Downstream geneDbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305A23.T7 (MSMg01no305_a23.b1)MSMg01-305A23.TJ (MSMg01no305_a23.g1)
ACCAG430152AG430153
length1,1621,222
length of high quality
(start - end)
406 (32 - 437)148 (307 - 454)
definitionCHROMAT_FILE: MSMg01no305_a23.b1 PHD_FILE: MSMg01no305_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:31 2005CHROMAT_FILE: MSMg01no305_a23.g1 PHD_FILE: MSMg01no305_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCTCTCTCTCGGCCTATCGACTCCTAAGGGAGAGGATCCGCGGAAT
TCCTATTTTGGAGGCCAGCGAGATTGCTCAGTGGGTAGTGGCATTTACAA
TACAAGCCCAGTGATCTGACTTCTGTCCCCAGAAAACACATGGCAACTGC
AGAGAACTGACTCTAAGTTGTCCTCTGACCTCTACGTGAGGAGAGGCACG
TGTGTGTCCCAGCACGTGTTTGGCCTGCATCCAAAATAATGCAATTTGGA
AAAGAATCCAGTACTTAGCAAAAGTCTGATGGCAAACACACAGACATTCC
TACTTTATAGACTCATACTGTGCTTTCAACAATTTCATGAACGTTTATAA
TGCCACTTATAGGAAGAAAATAAATCTTGACTGGCTGTGTTCAAATATTT
TTCCAGAGTAATAGATCTTCCTGGAAGCAATCAGGTTTGATNAANATTTA
TTTTTTTTCCCCCCCCCCACNAAAGANNNNNNNNANAAAAAAAAAAGGGG
GGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN
NNGGTTGNNNNNNGCGCTCTCTCTGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAAT
GGCCCACAAGAACCTGAACAAATGTTCAACATCCTTAATCCTCAGAAAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCCCACTTTCT
AAAAAAAAAAATTCAGGTGACAGCAGATGCTCGGGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGTGATTGCAAGCTTGTACTACCACTCA
AGAAACCAGTCTGGCGGTTCCTCAGAAAATTGGACACAGTACTACAGGAG
GATCCCACAATACCACTCCTGGGCATATACCCAGAAGATGTTCCAACTGG
TAAGAAGGACTTTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
NCAGAAGTTGTTTTTTTCTCCCCCCCCCCCCAANAGAGCCCCCCCCCCCC
AAAAAAAGGGAGGGGNNNNNNNNGNNNNNNNNCNNCNCNNNNNNNNNNNN
NGNNNNNNNGNNNNNCCNNGGCNNNNGGNNGGNCNNNGNGGGCGCCNCCC
CGNGNGNGGNNNCCCNNCCCCNNGGNCCCCCCCNNNCNGNCCCCCCGNNN
NGNGGNGNNNNGCCCCGCCCCNNGGNNNCCCNNGNNNNNGNNCCNNNNGC
CNNCCCCCCGNGCCCCCGNNNGCNGGNGCCCCCNCGGGGGGNNCCCNNGC
CCCCNCCNNGNNNGGGGNCCNNNCNCCCCNGGGNGGGNGNNCCCGCGCGC
CCGCCCGGNGCCCGGGCCCNNCGGCGGGCCCCCCCNGGGNCGGCCCNNCC
CCGGGGCCCCCCCCCCNNNCCCGCNCCCCNNGGCCGCCCCCCCGGCCNNC
CCCCCCCCCGGGCCCGCCGGCCCGCCCCCCCCCCGCGCCGCCCCCCGGCG
NGCCCNGGCCCGGGCCCCGCCNCNCCCCGNNGCGGCGCCCCCCCNCCCCC
CNCGGGGGCGGCCCCCCGCGCCCCCCCCNCGGGCCCCCCCGCCGNCGCCC
CCCGGCGCGCCCCCGCCCCCGCCNCCCCCNNGCCGGGCCCCCCCCCNGGN
CCCCCCCGNGCCCCCCCNNCGGCCCCGCCCCCCCCCCCCCCCNGGNCCCC
CNCNGCGGCCCCNNCCCGCCCCCCCCCGGNCCNCGCCGCCCCCCNCCCCC
GCCCNCCCNNNCCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_a23.b1 MSMg01no305_a23.b1 CHROMAT_FILE:
MSMg01no305_a23.b1 PHD_FILE: MSMg01no305_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:31 2005
         (406 letters)



>mm_chr5_8157060_8157865
          Length = 806

 Score =  601 bits (311), Expect = e-176
 Identities = 371/395 (93%), Gaps = 11/395 (2%)
 Strand = Plus / Minus

                                                                       
Query: 15  ggaattc-ctattttggaggccagcgagattgctcagtgggtagtggcatttacaataca 73
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 763 ggaattcactattttggaggccagcgagattgctcagtgggtagtggcatttaccataca 704

                                                                       
Query: 74  agcccagtgatctgacttctgtccccagaaaacacatggcaactgcagagaactgactct 133
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 703 agcccagtgatctgacttctgtccccagaacccacatggcaactgcagagaactgactct 644

                                                                       
Query: 134 aagttgtcctctgacctctacgtgaggagaggcacgtgtgtgtcccagcacgtgtttggc 193
           ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 643 aagttgtcctctgacctctacgtgaggtgtgacacgtgtgtgtcccagcacgtgtttggc 584

                                                                       
Query: 194 ctgcatccaaaataatgcaatttggaaaagaatccagtacttagcaaaagtctgatggca 253
           |||||||||||||||| ||||||||||| ||||||| ||| ||||| |||||||||||||
Sbjct: 583 ctgcatccaaaataattcaatttggaaa-gaatccactacctagcagaagtctgatggca 525

                                                                       
Query: 254 aacacacagacattcctactttata-gactcatactgtgctttcaacaatttcatgaacg 312
           ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct: 524 aacacacagacattcctactttataagactcatactgtgctttcaacaacttcatgaaag 465

                                                                       
Query: 313 tttataatgccacttataggaagaaaataaatcttgactggctgtgttcaaata----tt 368
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    | 
Sbjct: 464 tttataatgccacttataggaagaaaataaatcttgaatggctgtgttcaaataaaact- 406

                                              
Query: 369 tttccagagtaatagatcttcctggaagcaatcag 403
              ||||||||||||||||||||||||||||||||
Sbjct: 405 ---ccagagtaatagatcttcctggaagcaatcag 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)