BAC Information

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BAC

Clone NameMSMg01-305G20
Chromosome5 (Build37)
Map Location 122,656,670 - 122,657,074
singlet/doubletsinglet
Overlap genenone
Upstream geneRpl6, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc
Downstream geneHvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305G20.T7 (MSMg01no305_g20.b1)MSMg01-305G20.TJ (MSMg01no305_g20.g1)
ACCAG430402AG430403
length1,3141,297
length of high quality
(start - end)
411 (44 - 454)383 (73 - 455)
definitionCHROMAT_FILE: MSMg01no305_g20.b1 PHD_FILE: MSMg01no305_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:20 2005CHROMAT_FILE: MSMg01no305_g20.g1 PHD_FILE: MSMg01no305_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCGCACTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCTCCTCCCGGATGTCCCACCTTCTATTTCCTGCCTAAGCCATGG
GCCATAGGCTTTTTGATTGACAGGTAACACATCCATACAACACAGTCTGT
ACTTCCTCCATCCCCACCTGTTAGGCTCAGCCACGACCTCCCCTTGTCCT
ACCTTGTATAATGCATTTGCTCTGTCATTTGGTCCTTTTATGTCCTTTCA
CAGAGCAGTCTTGATGCGGGTCCGTGGTACCCACCAGCCTCTGCTGGTTT
AGTGCCCGCACTTAGACAATACTCAGAGATAATTTGTTGAATGAATATAA
GATCACCCAGCTGGCACGGGCAGGATGGAGGAAGGATTGAACTCCAGGTC
TTTTTGATGGCAACTGCTGTCTTTCCATCTTTCCAGATCATTCTGAGCAA
CCTTTTTTTTCCCCCCCCCCCGGNANGGGGTTGCACCTCATCAAAAAAAG
GGGGGCCGATGCCAGGAATCGAACCCAGGTCCTCACATGCTAGGTAAGTA
CTCTACCTCTGAGTTCCATTCCAAGTCCTAGCCACACTGCAGCATCACAC
AGGTCCCCAAGCCTCATTCAGACATGGTCAACTACCTACCTACATACATA
CACTCAGGGGCTGTCACAGATGGTAGTGAATCACATGGAGGTAGGTCCAG
GTAACTGATGTGACTCTGGGAACTCCAAACCCATCCCTGGCTGAAACCTC
ACCCCCTTCTTGCTTCCTTTCCCTCTTCTCACGCACTCCCGGGTGCTCTG
GGAAGGGAAGTGGTCGGCTGCAACCACGAGATACTGGAGACACCAGAGCC
TTTGAAGGTGGCCTTCTCTCCCTGCTGGTGGAGGAGGGAAGAAAGCTCAA
GCAAAAATAACCTCCAGGCCCTGGGCTTACAACTTACTTGATCTGTTTCT
GGAACATCAGGAGGGCAGGACCCTCCTACCTGGAAAGGGATGGATCTTCC
CCACACAAAAATGTGAATAGACTTGTTGGTGCGGCTTTTAATTCCTACAA
TTTTATCTCTTTTTCTTAATTAATTATTTCTCCCATATTAAAACATCCTC
ATCATCATTTATCTTCTCTCACATCGACCCAACACCATTTACTATCTCCT
TCATAATCAATTTATATCACTCTTATCCATGTTATCTACATTTAATCTTA
CAATAATACTTATATCAATGTCACCTGTTTCTTTATTTACATTCCTCTTT
CATCCTCAGTATTCATAATCTATTCACTCACCTATAATTTCTCTTCAAAC
TTAATATTCTAATA
NNNTTCGCGAGCGTGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGTTCCAGGGGATTCCATTCCCTTCCT
GGCATCCATGGGCCCTGCATGCACATGGTACTGAAGGAAAATGAGATTTT
GTAACTTGTGATTCATGTAAAAGAGTTGTCTATGAGCCCGTGGCCTGGGG
CCGAGAACAAAGCAGAACAGACAGGGCTGTTGTTAAGACATTCCTAAGAA
CAGCTAGATTGTACAAGCAGGGCTATCTTGTCTGGGTCAACACCACCTGG
CCGGAACCTCCCCTCTGTCTACTGCCCCTTGACGCTGGGTAAAGTCATAC
ATCAACTGGTTGCTATGTGAACAAAGATAAGCCCCCAGCCCATGGGAACA
TTTTTTTGATGCCATTTTGCTGACATGTAATCTTTCTGTTAATGTTTGAA
TATATTTTTTTTCCCCCCCCCCCCTGAATTCCACACCCCCCAAAAAAAAA
GGGGTANNAACCCCTAGCTTCTGAGCCTCATGGTCGAATCCACTGTCTCC
TGCGTGAGATACGTTTCGACCCGGAACTCCGCCATTAAACTACCTCGTGT
TTTTACATCAAGGCGTTGTGTTCTGTTTGTGATTCTTGGGTGCACTCCGA
ATCGGGAGTTGAGTGGGAGTTTCCCCACTAGGTTCTATCAGTACACAGAC
AGGCAGACAAACACTCAATGATAAAATGCATCAGGTGCTGGAGAGAGCAT
TCACTTGCTGCTCTTTTAGAGGACTCAGGCTAGGTTCTGAGAGATCCCCT
CATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAG
GGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCC
GCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTG
ACTGTGTTAGCCTGAAATGGTTGGCCCAACCTTGTTTCTGAACATGAACG
CCCGCCAGCCAACATGTTTATTTGAACATCCGGGGCGATTAACCGCTTGT
ATTTCAAAACGCTCTTGAACTGGTCCTTTCCGTTTTGGCGAAACCTTACC
CCCCAGGACGGAATTTTTCTCGGCTCGAAAGGATTCTTTCACCAGATTTC
CTCCTAAAAGATATTAACAAGTTTTGGGGGTGGAAATTATCCGCGCAGAT
ATATTTTATAACTAACGTCTCTTTCTCATCTCCTAAATTATTTATCATTC
TGTGTGATAAATATTCTAAATCCACCATATTTATCTCTTACTTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_g20.b1 MSMg01no305_g20.b1 CHROMAT_FILE:
MSMg01no305_g20.b1 PHD_FILE: MSMg01no305_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:20 2005
         (411 letters)



>mm_chr5_122656466_122657276
          Length = 811

 Score =  745 bits (385), Expect = 0.0
 Identities = 400/405 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctcctcccggatgtcccaccttctatttcctgcctaagccatgggccatag 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctcctcccggatgtcccaccttctatttcctgcctaagccatgggccatag 264

                                                                       
Query: 65  gctttttgattgacaggtaacacatccatacaacacagtctgtacttcctccatccccac 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 gctttttgattgacaggtaacacagccatacaacacagtctgtacttcctccatccccac 324

                                                                       
Query: 125 ctgttaggctcagccacgacctccccttgtcctaccttgtataatgcatttgctctgtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgttaggctcagccacgacctccccttgtcctaccttgtataatgcatttgctctgtca 384

                                                                       
Query: 185 tttggtccttttatgtcctttcacagagcagtcttgatgcgggtccgtggtacccaccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttggtccttttatgtcctttcacagagcagtcttgatgcgggtccgtggtacccaccag 444

                                                                       
Query: 245 cctctgctggtttagtgcccgcacttagacaatactcagagataatttgttgaatgaata 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 cctctgctggtttagtgcccgcacttagacaacactcagagataatttgttgaatgaata 504

                                                                       
Query: 305 taagatcacccagctggcacgggcaggatggaggaaggattgaactccaggtctttttga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 505 taagatcacccagctggcacgggcaggatggaggaaggattgaactccaggcctctttga 564

                                                        
Query: 365 tggcaactgctgtctttccatctttccagatcattctgagcaacc 409
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggcaactgctgtctttccatctttccagatcattctgagcaacc 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)