Query= MSMg01no305_j11.b1 MSMg01no305_j11.b1 CHROMAT_FILE:
MSMg01no305_j11.b1 PHD_FILE: MSMg01no305_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:43 2005
(426 letters)
>mm_chr5_103605817_103606642
Length = 826
Score = 677 bits (350), Expect = 0.0
Identities = 396/420 (94%), Gaps = 16/420 (3%)
Strand = Plus / Minus
Query: 19 gaattccttgggaaaaagaatggggcttctttgggcctaaggggaggtcagtgatattat 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gaattccttgggaaaaagaatggggcttctttgggcctaaggggaggtcagtgatattat 673
Query: 79 gctgtaaaaatttagggataatcactacctgatacagg--------acacacaatcgacc 130
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 672 gctgtaaaaatttagggataatcactacctgatacaggacctttgaacacacaatcgacc 613
Query: 131 tctgccttccctaccgagtctcagaacagggcgattggtgggctgagcaagtgtggaacg 190
|||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||
Sbjct: 612 tctgccttccctactgagtctcagaacagggcaattggttggatgagcaagtgtggaacg 553
Query: 191 gatcctgtgagcactgcctggtccctctctcttcaggctttcggtgtggctgtcattcag 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gatcctgtgagcactgcctggtccctctctcttcaggctttcggtgtggctgtcattcag 493
Query: 251 gctgcccacctcctccctgccaattaactcaggaaaggcatctgcaagtccctgcctccc 310
| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 492 gttgcccgcctcctccctgccaattaactcaggaaaggcatctgtaagtccctgcctccc 433
Query: 311 gttctgtgtctgcatagcctctgagttctataaatagatcctgcagaatgcaagctagct 370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 attctgtgtctgcatagcctctgagttctataaatagatcctgcagaatgcaagctagct 373
Query: 371 ga----ttttattatatcgtagaatatgtcacacagaggaaaggcagtctcctgagaggt 426
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gacgag----attatatcgtagaatatgtcacacagaggaaaggcagtctcctgagaggt 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_j11.g1 MSMg01no305_j11.g1 CHROMAT_FILE:
MSMg01no305_j11.g1 PHD_FILE: MSMg01no305_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:43 2005
(303 letters)
>mm_chr5_103541449_103542151
Length = 703
Score = 487 bits (252), Expect = e-142
Identities = 291/304 (95%), Gaps = 2/304 (0%)
Strand = Plus / Plus
Query: 1 tggcaccctcccttccgaggctcactctcctctggtcacgctgttccttctgtcttctac 60
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 201 tggcaccctgccttccgaggctcacgcccctctggtcacgctgttccttctgtcttctac 260
Query: 61 cactgcctgttggcgtgcaatgaggtcctctttccttcttcccc-agaccgtaatagggc 119
|||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||| |||
Sbjct: 261 cactgcctgttggcatgcaatgaggtcctctttgctt-ttcccctagaccgtaataaggc 319
Query: 120 tgtcatctcaacaagcaagagttacctagagtctaactaaagtccctgaccagccctgtc 179
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 320 tgtcttctcaacaagcaagagttatctagagtctaactaaagaccctgaccagccctgtc 379
Query: 180 cgtttctaccatatcccaatgctgcattctgcccacagtggcccaattcctaggatttgg 239
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 cctttctaccatatcccaatgctgcattctgcccacagtggcccaatccctaggatttgg 439
Query: 240 cacacagtgtgtgggcagagagcaaatggtgagtaaatcacctgtaattgactgattttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cacacagtgtgtgggcagagagcaaatggtgagtaaatcacctgtaattgactgattttt 499
Query: 300 ccac 303
||||
Sbjct: 500 ccac 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
