BAC Information

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BAC

Clone NameMSMg01-305N10
Chromosome5 (Build37)
Map Location 112,694,619 - 112,869,971
singlet/doubletdoublet
Overlap geneCrybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l
Upstream geneTtc28, Pitpnb, Mn1, A230057G18Rik, Cryba4
Downstream geneEG625464, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305N10.T7 (MSMg01no305_n10.b1)MSMg01-305N10.TJ (MSMg01no305_n10.g1)
ACCAG430678AG430679
length1,3171,258
length of high quality
(start - end)		321 (86 - 406)301 (480 - 780)
definitionCHROMAT_FILE: MSMg01no305_n10.b1 PHD_FILE: MSMg01no305_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:16 2005CHROMAT_FILE: MSMg01no305_n10.g1 PHD_FILE: MSMg01no305_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,694,619 - 112,694,940)(112,869,671 - 112,869,971)
sequence
NCCGACCNNNNNNNGGGCATTGCGCGCTAAGACTCCTATGGGAGAGGATC
CGCGGAATTCCAGGCCAGTCAGGGCTCCCTTTTGAGACTCTGTCTAGAAA
AGTGAAAAGTGAAAAACCCTCAAAAACTGATCACCAGAGTGATTGCTTCT
GGCCTGATTCTGCGGGCTCAGCACCCAGGCCCTGGAAGCCCTCTGTAACC
ACAAGTCTTGGCCCATGAGGCTTCGGATAACCGAGGGGAGCTGGGATTGG
TTGGCAGTTGTCAGTGGGCGGAGCGTCTAGCCCCTGAGTGGTGGGAGCAG
AGTCAGCCCAAGGAGAGCGTGAGGAAAAGCTATACAGGGTCCAGCGAGGG
CAGAGTCCTTCAACAGCAATTAAACACTAGCCCCTGGACAGCCGCCGCTA
TGGCAGCTTTTTGTGGTGGAGAAAGACGGCGAAGGAGGGAGTGTACATGA
TGTGGGGTCTTTTTTTTTCCCCCCCCCCCGGNGAGGTCTCACCTCTATAA
AAAAAGAGAGTGACGGACTTGCAAACTCCCCCCGCCCGCTCCCAAGAGCT
TCCGAATGTTGACGGATATAGGCTAACATATCACAGCGATTGATTAATTC
TCCTCTAAGGGCTTGATAGTCATCTCCTGTGACCCACCTGGATACCTCCT
ACCTACCCCCGATACAAGGGCCATTGCTGCCTTGCATTCCAAGCCTTCTT
TGCATCATGACTTTTCATACCATCGGATGAATCGTATTCTACTTCCCGTA
TTAGGGTCGCGACTCGAACTTGTTCCGTAAAGACCGTCTTAAGCTTCATT
CTACTACGAAAAACGCGATGGTCATGTACCCAAGGAAGACCTAGTCATGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCTC
TGACCTCCCTTTGTTAGGGAATTTATXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACCCGCAAAAATTAAAGCCTTGGTATTTATACAAACTTTTAT
CGCCCTAAAGGCTCGCTAATAAAAAAAGTTTTTTTCTATTGTCTTTTTCC
AAAAAAGGAGATCATTACTTCCATTCTTATTCCGTCGCAAGAGATTGTGT
TTTCCATACTTTCTATAGAACTTTTCTATTAAAATAATTATTCGCCTTTT
CATTTTAGTATAAATCTTTTGTTATCTTTCATTGGTTTAGATCTCTTTAA
AAATGACATCCATCTTTTTTTAATTATATACTTTCTATTTCTCTATGTGA
ATTTAATAATCTAGTTT

NCCCGCTCTTTTTTNACCGCATGGAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTAAGAGGCCATCAAANAGN
GNTGNNAAGGGGAGGGNGACCTTAAAACCTTACTGNGNAGGGNTGGGNTT
TACAGACCCAGCTGGGGAGAGCCACTTTAGAAAGGTCTCTTCCAGGATCC
ATTCTGATGTCTACAGATCTGCCTGTCGTGTTTATGGGAGGGAGCAGTGT
GTCCTGTTCCTGTTTGCTGTCTGGGCCTTTCCAGCATTGCTTCCTAGCCT
GCAGCTTGACATAGTGCATGGCTGAAGGAATTGTGTGTCCCTCAAAAGGT
TACATGGTGTTTATGCAGACAGACAGGAGCCTCCAGTGACCACCCCCTCC
TCTTCTCTCTTTTTTTCAAGCCTTAACCTGAGCAACAGCGACATCCTGAC
CATCTATGATGGCGATGATGTTGCGCCCCACGTCCTGGGCCAGTACTTTG
GCCACAGCAGCCCTCAGAAGCTGTACTCCTCCACACCGGACCTCACCATC
CAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCCAGGGATT
TATCATGAACTATATAGGTAGGTATCCCAACCCATCTGTCTTGTTTGTGT
TGGAGGAGAGGCATGGTGGTTTCCTGTGGGTACGTCTGTGAGGATACTGA
CTCTGTTAGAGCGCCCGCGTAGTTGTCCTGTGTAGTTTTAGGAACACCAT
TGTGGAAGGCTGTGTGACCTTGCGAGAGTCTGTGCTTTATTCTGAGCACC
CTTCTTGCTTGTATAAAGTGGAAATACTGTCTGTCTTAGTTAAGGTTTTA
CTGCTGTGAAGAGACCATGACCAAGGGATCTCTTATAAGGACAACATTTT
AATGGGGGCTGGTTTACAGGTTCAGGCCATTTATTTTCAAGGGGAGAAAA
ACAATAACATTCCCGCATGGCTGGTTGCAGGAAGAACTGAAAAGATCACA
TTCTTTTCTGAAAGGTGGCTAAAGAAATATGGGGCTCCCCTATAGTTGTT
TTGGGGTGGAAAATTTTAAACCACCCCCTGAGGGGACGATTTTCTTCTAA
AGAGCAACCCCTCCTTTATGTTCTACCGTAAATAGGTGCTCTTGTCGGAC
TAGGATATATAGGGTTTAGAAATAAACTCTATAACCCTAGAGTGGTGGTG
AAAGTAGGGAAATTTTTGTCGAAGTATTAACTAGGTGTTAACTTAAAAGC
AGATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_n10.b1 MSMg01no305_n10.b1 CHROMAT_FILE:
MSMg01no305_n10.b1 PHD_FILE: MSMg01no305_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:16 2005
         (321 letters)



>mm_chr5_112694419_112695140
          Length = 722

 Score =  555 bits (287), Expect = e-162
 Identities = 313/325 (96%), Gaps = 7/325 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactctgtctagaaaagtgaaaagtgaaaaac----cctcaaaaactgatcaccagagtg 56
           ||||||||||||||||| ||||||||||||||    |   | ||||||||||||||||||
Sbjct: 201 gactctgtctagaaaagggaaaagtgaaaaacggaac---agaaactgatcaccagagtg 257

                                                                       
Query: 57  attgcttctggcctgattctgcgggctcagcacccaggccctggaagccctctgtaacca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 attgcttctggcctgattctgcgggctcagcacccaggccctggaagccctctgtaacca 317

                                                                       
Query: 117 caagtcttggcccatgaggcttcggataaccgaggggagctgggattggttggcagttgt 176
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 318 caagtcttggcccatgaggcttcggataagcgaggggagctgggattggttggcagttgt 377

                                                                       
Query: 177 cagtgggcggagcgtctagcccctgagtggtgggagcagagtcagcccaaggagagcgtg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cagtgggcggagcgtctagcccctgagtggtgggagcagagtcagcccaaggagagcgtg 437

                                                                       
Query: 237 aggaaaagctatacagggtccagcgagggcagagtccttcaacagcaattaaacactagc 296
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 438 aggaaaagctatacagggtccagcgagggcagagtccttcaacaacatttaaacactagc 497

                                    
Query: 297 ccctggacagccgccgctatggcag 321
           |||||||||||||||||||||||||
Sbjct: 498 ccctggacagccgccgctatggcag 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no305_n10.g1 MSMg01no305_n10.g1 CHROMAT_FILE:
MSMg01no305_n10.g1 PHD_FILE: MSMg01no305_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:16 2005
         (301 letters)



>mm_chr5_112869471_112870171
          Length = 701

 Score =  567 bits (293), Expect = e-166
 Identities = 299/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgtcctgggccagtactttggccacagcagccctcagaagctgtactcctccacaccgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgtcctgggccagtactttggccacagcagccctcagaagctgtactcctccacaccgg 442

                                                                       
Query: 61  acctcaccatccagttccactccgaccctgcaggcctcatctttggcaagggccagggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctcaccatccagttccactccgaccctgcaggcctcatctttggcaagggccagggat 382

                                                                       
Query: 121 ttatcatgaactatataggtaggtatcccaacccatctgtcttgtttgtgttggaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatcatgaactatataggtaggtatcccaacccatctgtcttgtttgtgttggaggaga 322

                                                                       
Query: 181 ggcatggtggtttcctgtgggtacgtctgtgaggatactgactctgttagagcgcccgcg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 321 ggcatggtggtttcctgtgggtacgtctgtgaggatactgactctgttagagcgctggcg 262

                                                                       
Query: 241 tagttgtcctgtgtagttttaggaacaccattgtggaaggctgtgtgaccttgcgagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttgtcctgtgtagttttaggaacaccattgtggaaggctgtgtgaccttgcgagagt 202

            
Query: 301 c 301
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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