Query= MSMg01no305_n19.b1 MSMg01no305_n19.b1 CHROMAT_FILE:
MSMg01no305_n19.b1 PHD_FILE: MSMg01no305_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:19 2005
(368 letters)
>mm_chr5_82474605_82475373
Length = 769
Score = 652 bits (337), Expect = 0.0
Identities = 349/353 (98%), Gaps = 1/353 (0%)
Strand = Plus / Minus
Query: 17 gaattctttgtttctatgggactctgaggtcacattcctttctgctaataagacaggtca 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctttgtttctatgggactctgaggtcacattcctttctgctaataagacaggtca 510
Query: 77 tgtctggagaataacttttttcctgccctgtgcccgttcttacgttgttagcaaatggaa 136
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 509 tgtctggagaataacttttttcctgccctgtgcccgttcttatgttgttagcaaatggaa 450
Query: 137 gacaaaggctaggctagatatgctctggtaaacagatcacct-aaaaaacaagtagagtc 195
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 449 gacaaaggctaggctagatttgctctggtaaacagatcacctaaaaaaacaagtagagtc 390
Query: 196 actgtggaattgatgaaactttaaattgtggtgaggcatccactaagcaaaatgtcactg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 actgtggaattgatgaaactttaaattgtggtgaggcatccactaagcaaaatgtcactg 330
Query: 256 aattaacatcatagtaggctctgacccagcttctcactgatctccctactccgtggacag 315
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aattagcatcatagtaggctctgacccagcttctcactgatctccctactccgtggacag 270
Query: 316 tggagagagagaatcaggaggagtcgaataagagagaacgagagaactgaggt 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggagagagagaatcaggaggagtcgaataagagagaacgagagaactgaggt 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 769
Length adjustment: 9
Effective length of query: 359
Effective length of database: 760
Effective search space: 272840
Effective search space used: 272840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_n19.g1 MSMg01no305_n19.g1 CHROMAT_FILE:
MSMg01no305_n19.g1 PHD_FILE: MSMg01no305_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:19 2005
(328 letters)
>mm_chr5_82311330_82312057
Length = 728
Score = 526 bits (272), Expect = e-154
Identities = 309/328 (94%), Gaps = 13/328 (3%)
Strand = Plus / Plus
Query: 1 ttatctggtgctagaaacatgcctttaaaaaaatggctgagaagtttttgatcctggagt 60
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ttatctggtgctagaaacatggttttaaaaaaatggctgagaagtatttgatcctggagt 260
Query: 61 gaacttgttcctgctgaataattaaattgtcatgctgcacattgctgtctaaatatttat 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gaacttgttcctgctgaataattaaattgtcatgctgcacgttgctgtctaaatatt--- 317
Query: 121 atgtatttatatttatatatattttttaatcagcagaaatatactactccaagctttact 180
|||| ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 318 ---tatt--tatttat-----ttttttaatcagcagaaacatactactccaagctttact 367
Query: 181 catgggtgtctcattttacaaataattatgaatgcagaaatacctgactgcttaagatgg 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 catgggtgcctcattttacaaataattatgaatgcagaaatacctgactgcttaagatgg 427
Query: 241 tgagaatgagtggtggtaaagatcaaaatgacatttatttctcctcccctaaggttcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgagaatgagtggtggtaaagatcaaaatgacatttatttctcctcccctaaggttcaca 487
Query: 301 gaatattatggaagaaggagtataaaga 328
||||||||||||||||||||||||||||
Sbjct: 488 gaatattatggaagaaggagtataaaga 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
