Query= MSMg01no306_d21.b1 MSMg01no306_d21.b1 CHROMAT_FILE:
MSMg01no306_d21.b1 PHD_FILE: MSMg01no306_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:58 2005
(293 letters)
>mm_chr5_144150368_144151060
Length = 693
Score = 489 bits (253), Expect = e-143
Identities = 277/293 (94%), Gaps = 15/293 (5%)
Strand = Plus / Plus
Query: 1 tgacctggctgacctccatgacaccgtcagtgagattcaggtggcctgccagagcatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacctggctgacctccatgacaccgtcagtgagattcaggtggcctgccagagcatggc 260
Query: 61 cccttccagtgaggacaggtttgctgtggtcatggctgtatcctctaatcagcctgtcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttccagtgaggacaggtttgctgtggtcatggctgtatcctctaatcagcctgtcca 320
Query: 121 gcacaagcctggactctgggtaaaggtgactctggctctagtggtcagtgtcggtccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacaagcctggactctgggtaaaggtgactctggctctagtggtcagtgtcggtccttg 380
Query: 181 cagaccctccaggcagaagcaggtcagggccgttgtgagagcttccatcctggtacttag 240
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaccctccaggcagaagcacgtcagggccgttgtgagagcttccatcctggtactta- 439
Query: 241 aatccaggtgcttatgctcagctgaggactgagcttctctgctgtgtgtgtga 293
||| || ||||||||||||||||||||||||||||||||||
Sbjct: 440 --------tgc----gc--agctgaggactgagcttctctgctgtgtgtgtga 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no306_d21.g1 MSMg01no306_d21.g1 CHROMAT_FILE:
MSMg01no306_d21.g1 PHD_FILE: MSMg01no306_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:58 2005
(608 letters)
>mm_chr5_144320464_144321471
Length = 1008
Score = 1077 bits (557), Expect = 0.0
Identities = 592/609 (97%), Gaps = 10/609 (1%)
Strand = Plus / Minus
Query: 1 actctgtagaaaaggctacccttgcttgaactcaatgaaataaatctatctgcctctgct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 988 actctgtagaaaaggctacccttgcttgaactcaatgaaataaatctatctgcctctgtt 929
Query: 61 tcccaagtgctggtgtgcaccacgaacctggttaaggctttcattgatttcaacatcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tcccaagtgctggtgtgcaccacgaacctggttaaggctttcattgatttcaacat---- 873
Query: 121 aacaacaacaacaacaacatacacacataaacacacaccacaccccaagctgaacaacaa 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 872 -----caacaacaacaacatacacacatacacacacaccacaccccaagctgaacaacaa 818
Query: 181 caacatacacacacacatacacacacaccccaagttgaaatgagccaagtgaggtgctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 caacatacacacacacatacacacacaccccaagttgaaatgagccaagtgaggtgctat 758
Query: 241 atgactgtaatccatttatggaggaggccaaggcaaagaggctctccagctggagatcag 300
|||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 757 atgactataatccaggtatggaggaggccaaggcaaagaggctctcgagctggagatcag 698
Query: 301 c-atggactatatggtaagactctagctcaaagacatacgaagtaggcaccagaatattg 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 caatggactatatggtaagactctagctcaaagacatacgaagtaggcaccagaatattg 638
Query: 360 tgaatccctcacgccctgggggttgggaaggactttctagtgacagcaaacaccaagcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgaatccctcacgccctgggggttgggaaggactttctagtgacagcaaacaccaagcat 578
Query: 420 taaaaaaagattattaaactttgactcaaaaaagaaaaatgtcaggggtatggagagagg 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 577 taaaaaaagattattaaactttgactcaaaaaagaaaaatgtcaggggtgtggagagagg 518
Query: 480 atccagcggttaagcgcactggctgctcttgcacaggactggggcgagaactcagcacca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atccagcggttaagcgcactggctgctcttgcacaggactggggcgagaactcagcacca 458
Query: 540 cacggctgattccaagctcccgtaactccagttcagagaacctgacgctctcctctggcc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cacggctgattccaagctcccgtaactccagttcagagaacctgacgctctcctctggcc 398
Query: 600 tctgagggc 608
|||||||||
Sbjct: 397 tctgagggc 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
