ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGC
GGAATTCAGAAAGTACTTACTGCTAGGACTAGATGACTAAGAAGATTATA
GATCCTTAGGATTGATCTGTATTGAGACTTTGGAAGAGTTGGGAGCTGGA
GTCTCTAGGATCTTTAGAGTGCTAAAAGCAGAACTTAATGGGCCTGCAAA
GAGAGAAATGTCATTAGATATGCAGACAGCAGAGGCCAGCTTATGGACTT
CCCAGTAGAGAATGAGGATGGTACTGGGAGGTGATCTCGACGCTTTGCAT
TACTGTATAGATGATAGTCTGGCTATGCTCTGCCCATACACTCACAATAT
TAGGAGGGCTGAATTCAAAAGTAAGGAAGTCAGATTCTGGGTGAAGCATG
TTTAAAGATAGCATAGGCCTGGTATGGCTCATGCTCAAGCCTCTTACTGA
GTTCTCCAAGGAGGTAGACAGCTGGGTAGCTTGCCAAGGGAAGGAGCATG
AGCAAATAGAAACTGCTGTAGATGTACCTGTTGCAGAGAGAAAGGCTGTA
ACTGTTCAAGAGAGTGAGTTTCTTAAAGGCAAACTTTCCTTTGCACTATG
GGACAATGAGAAAGGTGTGCTGGAGACAAGACCCTACCTACCAAAGGCTT
CAACTTAAACTGTCATGTTGATTGAATAGCAGGGTGCCTCATAAGTGAAT
GCTGCTGAAGGGCTCCCCTGCTGGGAA

ACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTACCGAGGTAGTTAGTATAGGGGA
CACTGGTATTTTGGCTGGCTTGAGCTTGCATGGGTCTGTGTTTATCCTGA
CCACTGCTGTTAGTATTGTGTGCAGCTGCCATGTTATGTTGAGAAAACAC
ATTTTTTTCCTTGTAGCTATTCACCTACTCTGTCTCTTACAATATTTTCA
CCTCCTCTTCCTTTTCAATCCGTAAGGCTCAGGAGGAAAGGTGTGATAGA
CATGTCCCATCTCTGAGCATTCCACAGTTAGAGACACATTTTTATTGATT
GGGTAAATACAAGAAAAATCCATGAAGCATTGAAAAATACCATAGCATTT
ATTGGCTTCCAGTTCATTGTATGTTTTAAAAATTCTTTTTATGAAAATAT
ACCAGCAATACAAGACTATGTTAATATTATAAAATATAAAAGGCAAATTA
AGCTGAAGATATTTTTGCTATTTATTTATAGTAAACACTAAGAGTTTTAT
CTTATATGTATGCACAGTTATTAATAGCAGTGCATTTATATTTACTGTTA
TGCATATTACCTTATTTAATTGAATGTCATCATTTTGATTTTCACATTAT
AAAGATGAATATATATTTTAGTACTAAATATTGGGCTAGGCCTTTTCTTT
GTTACATTTTTTTTTCATTTTTGTCCC

Query= MSMg01no306_f23.g1 MSMg01no306_f23.g1 CHROMAT_FILE:
MSMg01no306_f23.g1 PHD_FILE: MSMg01no306_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:08 2005
         (600 letters)



>mm_chr5_39435557_39436556
          Length = 1000

 Score = 1137 bits (588), Expect = 0.0
 Identities = 597/600 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaccgaggtagttagtataggggacactggtattttggctggcttgagcttgcatggg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaccgaggtagttagtatcggggacactggtattttggctggcttgagcttgcatggg 260

                                                                       
Query: 61  tctgtgtttatcctgaccactgctgttagtattgtgtgcagctgccatgttatgttgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgtttatcctgaccactgctgttagtattgtgtgcagctgccatgttatgttgaga 320

                                                                       
Query: 121 aaacacatttttttccttgtagctattcacctactctgtctcttacaatattttcacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacacatttttttccttgtagctattcacctactctgtctcttacaatattttcacctc 380

                                                                       
Query: 181 ctcttccttttcaatccgtaaggctcaggaggaaaggtgtgatagacatgtcccatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttccttttcaatccgtaaggctcaggaggaaaggtgtgatagacatgtcccatctct 440

                                                                       
Query: 241 gagcattccacagttagagacacatttttattgattgggtaaatacaagaaaaatccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcattccacagttagagacacatttttattgattgggtaaatacaagaaaaatccatg 500

                                                                       
Query: 301 aagcattgaaaaataccatagcatttattggcttccagttcattgtatgttttaaaaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcattgaaaaataccatagcatttattggcttccagttcattgtatgttttaaaaatt 560

                                                                       
Query: 361 ctttttatgaaaatataccagcaatacaagactatgttaatattataaaatataaaaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttttatgaaaatataccagcaatacaagactatgttaatattataaaatataaaaggc 620

                                                                       
Query: 421 aaattaagctgaagatatttttgctatttatttatagtaaacactaagagttttatctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaattaagctgaagatatttttgctatttatttatagtaaacactaagagttttatctta 680

                                                                       
Query: 481 tatgtatgcacagttattaatagcagtgcatttatatttactgttatgcatattacctta 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 tatgtatgcacagttattaatagcagtgcatttatatttactattatgcatattacctta 740

                                                                       
Query: 541 tttaattgaatgtcatcattttgattttcacattataaagatgaatatatattttagtac 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttaattgcatgtcatcattttgattttcacattataaagatgaatatatattttagtac 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)