BAC Information

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BAC

Clone NameMSMg01-306H07
Chromosome5 (Build37)
Map Location 14,013,116 - 14,013,309
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306H07.T7 (MSMg01no306_h07.b1)MSMg01-306H07.TJ (MSMg01no306_h07.g1)
ACCAG431112AG431113
length737740
length of high quality
(start - end)
194 (125 - 318)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no306_h07.b1 PHD_FILE: MSMg01no306_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:15 2005CHROMAT_FILE: MSMg01no306_h07.g1 PHD_FILE: MSMg01no306_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTTTTATTTCATGAAAATGGGTGGTGTCCTTAATCAAAATATTTAT
CTGTTTGGAACATTATTTCTACCATATGCAAAATGTAGTGGAAAATGTAA
GTGTTCTGAGAAAGGTATACATGTATTTAAATATTTATTTTTAGAGATTA
TCATGTCTATGTTCTATTTTGCCATTAGAATTCTGAATTATTAAAATAAG
TTTGCCTTCTTCTGTCTAAAGTATGAAAATAGCTCAATGGGAAAATGGGG
AAAAGTGTTTGCCTTGCATATTTTTTCTCTAGTATCTGATTCATGGAACC
AAATTTTTACTANATGACTTTCCCATCAAACCCCATTTCTCCTAAAAACT
ACCACTTCTGAAAATAGCCTTAAAGAAAACATAAAAGATTTGTTTTGGTG
TTTTTTGGATTCTTGTGTCATTTGCAAATGCTTTATATTTTCAGAGGCAT
TACTAAAGATATAGAGTAACTCTTGTATAGTGTTGAAGAGATCTATGCAT
CAGGCAACTCAACACCTCTTCATCCCATTAATGAAATGAATGACCTTTTA
TGAAAGACAATACAGCTCTCACGATGAAAGGCAGTTCATATTCCATAAAC
ATAATATAATATTCTTTACACATTTCCATGTTGTCAGAAAACCACAGTAA
ATAATGCATTTGAAAAAAAATTGCTGGAAAAATTGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCACAGCCATATTCCCCATAG
CTGGACTGATAGAAAAATGGAATGACTTTTTGAAGAGACAGTTAGAATGC
CAATTAGGTGGCATCAGCAAGGATGTCTGCATCAAGGTTCTTTAGAAGTC
AGTATGTGGGTTGAATCAGCCTTCGATGTCTGCTAGAGTTTCTCTTATAG
CCATAATTCATGAGTCCAGGAATCAAGGAGTGGCAAAAAAAAATATTTCC
ACTCACCCTTAATCTTAGTGACCCATTTGTAAGTTTTTCCTTCCTGAACC
GAAGAAGACAGTAAGATCTGTTGTTCTAGAAGCTTTGCTTCCAGAGGAGG
GAAGTGTTCCTGCCATGAACCACAATGAACATTCCATTGAACTTGAAGCT
CAAACTTCTGCCTGGTCATTTTGGGCTTCTAAGGATTTTAAATTAACAGG
CTAATGAAGGAATAACAATGTTAGCAGGGTAACAGATCCAGATTACCATG
GTGAAATTATATTGCCTCTCCACAATGGAGGTAAAGATTGAGTCTGAAGG
TAGAAGATTCTTAAGCACACATCTTAGTAGTATCATGCCTGTGATTAAAG
TCAATCAGAAACTACATCTGCCTAATCTAAGCAGGAATTCAAAGAGCACA
GACCCGTTATGAATAAAGGTATGGGTCCATCCTTTTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_h07.b1 MSMg01no306_h07.b1 CHROMAT_FILE:
MSMg01no306_h07.b1 PHD_FILE: MSMg01no306_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:15 2005
         (194 letters)



>mm_chr5_14012916_14013509
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgcaaaatgtagtggaaaatgtaagtgttctgagaaaggtatacatgtatttaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tatgcaaaatgtagtggaaaatgtaagtgttctgagaaaggtatacatgtatttaaatat 335

                                                                       
Query: 61  ttatttttagagattatcatgtctatgttctattttgccattagaattctgaattattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttatttttagagattatcatgtctatgttctattttgccattagaattctgaattattaa 275

                                                                       
Query: 121 aataagtttgccttcttctgtctaaagtatgaaaatagctcaatgggaaaatggggaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aataagtttgccttcttctgtctaaagtatgaaaatagctcaatgggaaaatggggaaaa 215

                         
Query: 181 gtgtttgccttgca 194
           ||||||||||||||
Sbjct: 214 gtgtttgccttgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)