XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAGGCAGTTTACGGTGAGTCTTAGCTCAGGCACAGCTGCAGATGAGTTG
GTCTCTCATGGATTTTTTTCCTCAAACTTTGCATCTCTGATACCTAGTTC
ATGTCTCCCAGCCTGTCCTAGCTGCTCTTGTACTATTTGCTGAAAGGCAG
AATATTGGCTCATTTCTTATGGTAATACCCTTGATCAAGACAAAAGCCCT
TAATTGAATAAGTGATTATCTTTGAAATTATCAGTACACACAGAAGCATA
GCAAATGACTTCGCTGATGTCTCTTAGCTGGATCCATCCGCTGTCTTGGT
CTTGTGTATTTTTTCATTACCGCCCCCCCCCTGTTATTGGCTTCCTGCTC
ACCCACTGAGTCCCGCCCACTGAAAAAAAACAAATAGGGCCCCATATTCA
AGGGTCTGCTGATCCTGTAAGACAGGTGGCTCAGTTCAGAGACTCATCCA
TGGTCCAGAGTATACATCGGCTCACGTCAGTCTGACCTCTTTATAGATAC
CCATATCTTCATTTTTTATGAGTTATCTCTTAAGTTTTGCATATTTATAA
ATAATTTCCTCCTTTTGGGAAAAGGCTATATGGTTCCTAACAAAATTACC
ACTGTTCTCACTGGTGTCCCCTGCAATTGCTTTAATTTGACATGCCCCTT
GAACACCAAGGCTTTTGTTTGGTCCCCCTTTTGGCTCCCCCGGTGTTACT
TACGATTGGTTGTTAATCATTTGTGATGTCG

CTCCTCCTTTCGTTTTGGCGGCCCACCCCCTTTTNNNNNTCTTCAATGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGCTTGCATGCCCTCATACAGCATTCTCTTG
CCTTATGTAGAGCAGGATCCCCGTGCCTGGGGAATAGAGCCTTCCAAAGT
GGACCCCATTGGGTCTTCTTATACCAATTTAGAATGAAGACGGTCTCCCA
CAGATGTACCCACAGAGCAACCTGATCAGGACCATTGCTGATTGTCTTTC
TAAGTGATTCTAAGTTGTAGCAAGCTGACATTCAAAACTCACCAGCACAA
CACCCAAGTGACTGTTTCTTAAGCAAGGTTTGTAATACACAGGGCGAGAG
AAATATTTAGTAATTGACCCTATGCAATTCCCAAAAAGGGTCCATGATTA
TATTTAAGCGCCCCCCCGTCCAAAAAAAAAAAAAAAACCTGGGTGGTAGG
CTGGAATGGTATTTTGGAAACCTGTAAGAGAACAGGGGCTAAGTGGCGAG
AGTAAGAAATGTAGCCTAGACAGTTATTCTGATTCAAGCTCACATTTTTA
TTGTTGTGACACTACCTATGAACGAATGGCGACGCTATCCGATTCCTACC
AATTAACCTCCTGGTTCCCGTATAAATGTGCACCTGCTGCGGCTTTCCCC
ATGTTTTTTTGCAATGTTTCCTGCCCCTAACTTAATTTTTTTTTGTAGTC
CCACTCTTTTTTAGCCATTTTATTCTCCCACCTCTTGTTTCCCCATGTGT
ATGACCTACCCCCCCTCTTTTTTTTTTAGCCCCCACCTTTTGTAN

Query= MSMg01no307_j07.b1 MSMg01no307_j07.b1 CHROMAT_FILE:
MSMg01no307_j07.b1 PHD_FILE: MSMg01no307_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:40 2005
         (234 letters)



>mm_chr5_128396407_128397040
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgcatctctgatacctagttcatgtctcccagcctgtcctagctgctcttgtacta 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 actttgcatctctgatacctagttcatgtctcccagcctgtcccagctgctcttgtacta 260

                                                                       
Query: 61  tttgctgaaaggcagaatattggctcatttcttatggtaatacccttgatcaagacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgctgaaaggcagaatattggctcatttcttatggtaatacccttgatcaagacaaaa 320

                                                                       
Query: 121 gcccttaattgaataagtgattatctttgaaattatcagtacacacagaagcatagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gcccttaattgaataagtgattatctttgaaattatcagtacacacagaggcatagcaaa 380

                                                                 
Query: 181 tgacttcgctgatgtctcttagctggatccatccgctgtcttggtcttgtgtat 234
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacttcgctgatggctcttagctggatccatccgctgtcttggtcttgtgtat 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no307_j07.g1 MSMg01no307_j07.g1 CHROMAT_FILE:
MSMg01no307_j07.g1 PHD_FILE: MSMg01no307_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:40 2005
         (245 letters)



>mm_chr5_128566477_128567121
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcttgcatgccctcatacagcattctcttgccttatgtagagcaggatccccgtgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttgcttgcatgccctcatacagcattctcttgccttatgtagagcaggatccccgtgcct 315

                                                                       
Query: 61  ggggaatagagccttccaaagtggaccccattgggtcttcttataccaatttagaatgaa 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggggaatagagccttccacagtggaccccattgggtcttcttataccaatttagaatgaa 255

                                                                       
Query: 121 gacggtctcccacagatgtacccacagagcaacctgatcaggaccattgctgattgtctt 180
           ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 254 gacgggctcccacagatgtacccacagagcaacctgatcaggacaattgctgattgtctt 195

                                                                       
Query: 181 tctaagtgattctaagttgtagcaagctgacattcaaaactcaccagcacaacacccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 194 tctaagtgattctaagttgtagcaagctgacattcaaaactcaccagcacagcacccaag 135

                
Query: 241 tgact 245
           |||||
Sbjct: 134 tgact 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)