BAC Information

Click to search

BAC

Clone NameMSMg01-307N23
Chromosome5 (Build37)
Map Location 45,302,061 - 45,369,874
singlet/doubletdoublet
Overlap genenone
Upstream geneCd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307N23.T7 (MSMg01no307_n23.b1)MSMg01-307N23.TJ (MSMg01no307_n23.g1)
ACCAG432103AG432104
length734730
length of high quality
(start - end)		295 (437 - 731)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no307_n23.b1 PHD_FILE: MSMg01no307_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:02 2005CHROMAT_FILE: MSMg01no307_n23.g1 PHD_FILE: MSMg01no307_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,302,061 - 45,302,350)(45,369,591 - 45,369,874)
sequence
ACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGAGTATCACTGGCTTTGGTTGTCTCCCTGGGTTCTGGCCT
TGGTGCTTCATGATCATAATTTTGCGCTTGTGTGATCTGAGGAGCTTCTG
TGTCTTTAAAATCATTCCAATGAAACAACACACCAAGACTAAGCCCCTTC
TTCCTTGTACAGATTCGGGTAACTTTTTTCTTTCTCTGTTTCTGCTACCA
AGGTAGATGATAACTCTGAGCAGGACGTATATGTACCCAGTATCATGAAG
CCTCCAACAGTCTGTATTTTCTCAATGGGCATATTAATTACTTTTGTCCT
TGCAATGATCAAATACTTGTGGAGCGAACCACCTATACTACGGGAGAGGC
TTTGTTCACATGCGAGCAAACAGTAAAAAGAGATGATGAGTTCTCTGCTA
CACCCTTCTTTCAGCCCATGAAACCAGTGCATGCAATGCTGCTGCTTCTT
TTCAGGACAGGTCTGTATCCCAACTGAATCCTCTCTGGGAAATTTCATCA
CCGACACACCCAAAGCCTCACTAGTGCTATGACCTAAACAAGTTGGCAAT
GAAGATTGTCTAGTAGAGTCCACAAACTCTAATGACTCTCATTGTTCAAA
CTGAGTCTTCACCCTCTGCAGTATATCTGATACTTTATACTTAAAACCTT
GAACTAATCTCTTAAGAATGTGGTCAGTAGCTCC

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACATACTGCCAGGACAGTCCTGTGAG
ACAGATGGACTATGGGGTCAGGAAGACCTTGGCAGACTCCTGAGCTCTTC
AACCTTTTGCTGTGAGAAGTCCAGTTTCACTCACACCTCCTGTGCAAAAA
TCCCATTTCTGGAACTGTGGATAATCCCTGGTTGTTCTAATTTGCACTTG
GTTGAGGGAGTTCACAGGATGTGGTGCTTTTAGTTTTAAGCCTGGTTTAA
GATTCTCCTGAGACTTAGGTCCTTCACTGACTAAGTCAAGAGAGTTCCAG
ATGAATATTTTTTATTTGACCACCCCCCCATTTCATGAGTCCAGTTCTTG
GCTTCAGGAGTCTAGACAAGGCAATGAACATAATGACAATCAATCTTGGC
TTGGAAGTTGGTCCAACAAGGGCACCAAAGGCTTGCTAGCCAATTACACT
TTTTCCCTGACAGAGCTAAATGTTGATTTGGAGGCTTGGCAAACCACTGG
AAAAAATGACATTGACCAAATGAACCCAGAGAAGACCAAGAAGGTAAAAC
ACATTATCATAGTGACCTGTGTCTAAGGAACAGTCAATAGATCCCCTCTG
CTGGTGGGACACAGTGCGGCCAAGGAATGGATTCAATTCTGAGAGCCCTT
GGTTTCTGGTCCCAAGTCTTCAAAGCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_n23.b1 MSMg01no307_n23.b1 CHROMAT_FILE:
MSMg01no307_n23.b1 PHD_FILE: MSMg01no307_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:02 2005
         (295 letters)



>mm_chr5_45301858_45302552
          Length = 695

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gttctctgctacacccttctttcagcccatgaaaccagtgcatgcaatgctgctgcttct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gttctctgctacacccttctttcagcccatgaaaccagtgcatgcaatgctgctgcttct 263

                                                                       
Query: 64  tttcaggacaggtctgtatcccaactgaatcctctctgggaaatttcatcaccgacacac 123
           ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 tttcagggcaggtctgtatcccaactgaatcctctctggaaaatttcatcaccgacacac 323

                                                                       
Query: 124 ccaaagcctcactagtgctatgacctaaacaagttggcaatgaagattgtctagtagagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaaagcctcactagtgctatgacctaaacaagttggcaatgaagattgtctagtagagt 383

                                                                       
Query: 184 ccacaaactctaatgactctcattgttcaaactgagtcttcaccctctgcagtatatctg 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 ccacaaactctaatgactctcattattcaaactgagtcttcaccctctgcagtatatctg 443

                                                             
Query: 244 atactttatacttaaaaccttgaactaatctcttaagaatgtggtcagta 293
           ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 atactttatacttaaaaccttgaactaatatcttaagaatgtggtcagta 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no307_n23.g1 MSMg01no307_n23.g1 CHROMAT_FILE:
MSMg01no307_n23.g1 PHD_FILE: MSMg01no307_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:02 2005
         (284 letters)



>mm_chr5_45369391_45370074
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatactgccaggacagtcctgtgagacagatggactatggggtcaggaagaccttggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cacatactgccaggacagtcctgtgagacagatggactatggggtcaggaagaccttggc 425

                                                                       
Query: 61  agactcctgagctcttcaaccttttgctgtgagaagtccagtttcactcacacctcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agactcctgagctcttcaaccttttgctgtgagaagtccagtttcactcacacctcctgt 365

                                                                       
Query: 121 gcaaaaatcccatttctggaactgtggataatccctggttgttctaatttgcacttggtt 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gcaaaaatcccatttctgggactgtggataatccctggttgttctaatttgcacttggtt 305

                                                                       
Query: 181 gagggagttcacaggatgtggtgcttttagttttaagcctggtttaagattctcctgaga 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gagtgagttcacaggatgtggtgcttttagttttaagcctggtttaagattctcctgaga 245

                                                       
Query: 241 cttaggtccttcactgactaagtcaagagagttccagatgaata 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cttaggtccttcactgactaagtcaagagagttccagatgaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |