BAC Information

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BAC

Clone NameMSMg01-308B02
Chromosome5 (Build37)
Map Location 52,261,825 - 52,262,341
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308B02.T7 (MSMg01no308_b02.b1)MSMg01-308B02.TJ (MSMg01no308_b02.g1)
ACCAG432246AG432247
length1,058697
length of high quality
(start - end)
---519 (57 - 575)
definitionCHROMAT_FILE: MSMg01no308_b02.b1 PHD_FILE: MSMg01no308_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:17 2005CHROMAT_FILE: MSMg01no308_b02.g1 PHD_FILE: MSMg01no308_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTAAGGGCTCTTTNTTTTNCCNTTCCCNTTTCCTTCNNCCCTTTTTTTT
TTTCTCCCCCCCCTTTTAAAAATTGGGGCCCCTTTTAATATTTCTTTTTT
TTCAAAAAAAAGGGGGGGATATTTAAAAATTTTCCAAAACAAAACCTCTT
TAAAAAAATATAAAATAAAAGGGGTNTTTCCTCTTNGAAAATTTTTTTTT
CCCCACCATCATGAGTACAGTTTCAATGTACTTGCTTATTCCAGATCAAC
CGAATGCATACCTTAATGATTGTATACTTTTAAAGAGGTTAACCTGGGTC
AAAATCCTTTTCCAAAAAAAAAATTTTTCACTTTCCTTCNCCCCGGATTT
TCCTTTCGCTGGGGGGGTTTATTTTCTTTTTTCAATTTNCCCTTTTCCGG
TTTTCTCCCTCCCTTTTTACCTCTTTTCTCCTCCCTCTTCTCTTTTTTTC
TCCCCTTTTTTTTTTTTTTTTCCCCCTCCCCCTCTTCCCTTACTTCTCTT
TCCCCCCTCTCTTTTTTTTTTTTTTTCTTTTTTCCCCCCCCCGTCCTCCC
CCCTTTCCNTTCTTTTGTGTGGTTTTTTTGTCTTTTTTTTTTNNNCCCCC
CCCCCCCCCCCCCTCTCCCTCCCTTTATCTTCCCTTTATTTTTTTTCCCA
TCTCCTTTTTCCCCTTTTTTTTTTTTTTTTTTTTTTCTCCCTTCACTTAT
TTTCTTTTTTTTCCCTCCTTTCCCTTTTTTCCTTATTACACATCTCACAT
TCTCCTTCCCTTCTTTTTCGGTTTCTTTCCCCTTTTTTTATTCTTCCCTT
CTCTTTTTTTTTCCACCTTTCTTTTTCCCTTTTATATTCCTTTTAGTTTT
TTCCCTTTTTTTTCTCCGTCTCCTTTTTTTATCCCCCTATATCCGTTCCT
CTTTTTTCTTCTTTTCCGGCGAGAGGAGGGGAAAAGAAAAAGTGTNTCAT
AGTTTATCCCATCCCGAAAGAGAGAGATATAAAAAATGCTTCTNCTTNCG
TTTTTTTATGATGGGTAGGAGGGAAAGACAAGATGCNTTTATNCCTGGTC
CCNCCCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGGTTAGCTTGCAGAGGCCACGCATAGACGATCACACTAGCCCC
AGAACTAATTTTTGGATGACCAGGGCTCACAGGCATAAGAGTGACTTCAA
CTTCTAAAAGAGTCTACAAGGCTGGTGACTGCCACTCTCTAAGCTTTCTT
CTGGGAGAGCTTTGGGAGAGGAGTGTGGCTGTAGGCTGCTCATTACATTG
GGCTTATTTTATCCTTTAAGCAAATGCTAATAGGTTTTTCTAGAAGCGGG
CCTTGTGGTTCTCTCTGGAGGAATGTGCATTAGGATGCTGAGTTGTATAT
GCAAGTTGGCTACAAGAGCCTCAGCTTGTTACCCAGTTTCCTCCCATCAC
CCTTCTTACTATGGTGTTTAGTTTCAGCTGCCCTGTTTGGAAAACAGCTC
CAAACAGGAAACTCTTTGAGTGTATCACTCCATTTAGGTCTCACAGCATC
TGCTAACATTAACAGCGTCTTCATTTTATCAGTAAAGAGTCTCAGAGAGC
TTATTTAACTTGCTTCAGGTTATGGCGCAAATAAGTGTCAAAGTTAAGAT
GGATACGCTAATTGGCTTGTCACTGAAGCCCAGACCGTGACTTTTACTGA
ATTCTCAGCTATGTTATATAACTACCATAGATACCAAATGTGTAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_b02.g1 MSMg01no308_b02.g1 CHROMAT_FILE:
MSMg01no308_b02.g1 PHD_FILE: MSMg01no308_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:18 2005
         (519 letters)



>mm_chr5_52261740_52262658
          Length = 919

 Score =  915 bits (473), Expect = 0.0
 Identities = 506/517 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggttagcttgcagaggccacgcatagacgatcacactagccccagaactaatttttgga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 602 tggttagcttgcagaggccacgcatagacgatcacactagccccagaagtaatttttgga 543

                                                                       
Query: 61  tgaccagggctcacaggcataagagtgacttcaacttctaaaagagtctacaaggctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgaccagggctcacaggcataagagtgacttcaacttctaaaagagtctacaaggctggt 483

                                                                       
Query: 121 gactgccactctctaagctttcttctgggagagctttgggagaggagtgtggctgtaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gactgccactctctaagctttcttctgggagagctttgggagaggagtgtggctgtaggc 423

                                                                       
Query: 181 tgctcattacattgggcttattttatcctttaagcaaatgctaataggtttttctagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgctcattacattgggcttattttatcctttaagcaaatgctaataggtttttctagaag 363

                                                                       
Query: 241 cgggccttgtggttctctctggaggaatgtgcattaggatgctgagttgtatatgcaagt 300
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 362 cgggccttgtggttctctctggaggaatgtgctttaggatgctgagttggatatgcaagt 303

                                                                       
Query: 301 tggctacaagagcctcagcttgttacccagtttcctcccatcacccttcttactatggtg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  
Sbjct: 302 tggctacaagagcctcagcttgttacccagtttcctcccatcagccttcttactatggca 243

                                                                       
Query: 361 tttagtttcagctgccctgtttggaaaacagctccaaacaggaaactctttgagtgtatc 420
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttagtttcagctgccccgtttagaaaacagctccaaacaggaaactctttgagtgtatc 183

                                                                       
Query: 421 actccatttaggtctcacagcatctgctaacattaacagcgtcttcattttatcagtaaa 480
           |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 182 actccatttaagtctcacagcatcttctaacattaacagcatcttcattttatcagtaaa 123

                                                
Query: 481 gagtctcagagagcttatttaacttgcttcaggttat 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 122 gagtctcagagagcttatttaacttgcttcaggttat 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)