BAC Information

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BAC

Clone NameMSMg01-308C09
Chromosome5 (Build37)
Map Location 138,978,615 - 138,978,855
singlet/doubletsinglet
Overlap genenone
Upstream geneActl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533
Downstream gene1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308C09.T7 (MSMg01no308_c09.b1)MSMg01-308C09.TJ (MSMg01no308_c09.g1)
ACCAG432306AG432307
length735723
length of high quality
(start - end)
371 (46 - 416)241 (128 - 368)
definitionCHROMAT_FILE: MSMg01no308_c09.b1 PHD_FILE: MSMg01no308_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:23 2005CHROMAT_FILE: MSMg01no308_c09.g1 PHD_FILE: MSMg01no308_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTTTGTTCCTAGCCTTCCTTTCCCTAGTTTTCAGACCCCCATGA
AGAGAGAATAATAGAAGTTGCTATAACATGGGATGGCCAATAGCCCCATC
TTGTGTCAACTATTTATTGCTCAAAATTTACTCCCAGTAAGAAAAATGCA
ACCCTCTCTTATTACATTTATTGTCTAGTTGATATACTTTTAGCAGCACT
TAGTGAAGATTTAATTGCTCAGATGTTTTTCACTATTTAGTTTTATTTAC
AACATAATCAGGTGGAAATTTCCTCTGTGTGTGGCGGGGAGACACAGCTT
ACTGCTCACTTTTGATTCTTCTTTCTTTCTTTCTTTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTGCTCTCATTTCTCTCTTTTGATCTCTCGTCTCT
CTCTCTCTCTCCTTTGTGTTTCAAGACGGCTTCTTTGAGAGCCCTGCTGT
TCTGGAATTCACTTTGTATATCAGTCCGCTTTCTTCTTTGTACATATGCA
TTTGTACCTTGTTTCACCTGCACCCTCCCTCTTTTTAAATACAGTGCAAT
TTGCCAAATCCTTTATCTTTATTTATACGAATCACACTCTCTCTTCTTAT
TTTTATAAAATTTAATCCACCGCACAATTTCTCCTATCTATGCCTTCGCT
CTACCGTTTTTTTTTCTTCCATACTCCCTCCCCCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACCTTTGGAAAAAGTCAGGGAATGTTTCT
TTTAGACTGCATGTCCCCGCGCAGGAGATAATGGTTTGAGACTTACCCCC
ATTTCTGAGACGTTGTCTCAGGCATTTAAGGCTGCTAAGTGACATAATGT
AAAGTGCTAAACCCACTCCAGTAGCGACTCGAGTGACAGGCCTAGAAATC
TGGATGCACTGGACATATAATCAGGCCATTATGTTCTCACAGTCTGATCT
GTGAACTTTGTATCCTTTGTTCTAGTGCCTTCTTCATTTTCCTCTCTCTG
TTGCCTATCTTTTTTTGTCCCCCGCCCCCTGTTTTTGTTTTTTTGAGACA
GGGTTTCTCTGTATAGCCCTGTATGTCCTGGAACTCACTTTGTAGACCAG
GCTGGCCTCAAACTCATAAATCCTCCTACCTCTGCCTCCCAAGTGCTGTG
ATTAAAGGCTTGCTACACCATGCCTGGCTCTGTTGCCTATCTTGACCTAT
AAATTCTGTCCCTTTAATTCAAATCTTTCCCCTACGCCCTATTGTTAACT
CTTATATCTCTCTCTCTGTGCTGTTCATTCTGCTCTACAAATTCTTGTAT
TTTCTGTACTAGACTCTGCTTCCATAATTTTATTTTCGTTATGTTGTACT
TCTGACATTGTAGCATCTACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_c09.g1 MSMg01no308_c09.g1 CHROMAT_FILE:
MSMg01no308_c09.g1 PHD_FILE: MSMg01no308_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:24 2005
         (241 letters)



>mm_chr5_138978284_138978924
          Length = 641

 Score =  427 bits (221), Expect = e-124
 Identities = 236/241 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatggtttgagacttacccccatttctgagacgttgtctcaggcatttaaggctgcta 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 572 ataatggtttgagacttacccccatttctgaggcgttgtctcaggcatttagggctgcta 513

                                                                       
Query: 61  agtgacataatgtaaagtgctaaacccactccagtagcgactcgagtgacaggcctagaa 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 512 agtgacataatgtaaagtgctacacccactccagtagcgactcgagtgacaggcctagaa 453

                                                                       
Query: 121 atctggatgcactggacatataatcaggccattatgttctcacagtctgatctgtgaact 180
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 452 atttggatgcactggacatataatcaggccattatgttctcacagtctgatctgtgaatt 393

                                                                       
Query: 181 ttgtatcctttgttctagtgccttcttcattttcctctctctgttgcctatctttttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgtatcctttgttctagtgccttcttcattttcctctctctgttgcctatctttttttg 333

            
Query: 241 t 241
           |
Sbjct: 332 t 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)