BAC Information

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BAC

Clone NameMSMg01-308C15
Chromosome5 (Build37)
Map Location 117,053,428 - 117,210,140
singlet/doubletdoublet
Overlap geneLOC433943, Gm1684
Upstream geneGcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308C15.T7 (MSMg01no308_c15.b1)MSMg01-308C15.TJ (MSMg01no308_c15.g1)
ACCAG432318AG432319
length884739
length of high quality
(start - end)
117 (64 - 180)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no308_c15.b1 PHD_FILE: MSMg01no308_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:25 2005CHROMAT_FILE: MSMg01no308_c15.g1 PHD_FILE: MSMg01no308_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,210,024 - 117,210,140)(117,053,428 - 117,053,719)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCGTGAGCATCCGCGGAATTCCTCGG
CTTTCCCACCTTGTCAACCACCATTGTCGAGAGAAGTTCTTTTCGCTCCC
AACTTCTTCAGACTTCCTGTGTAGACCATGCTTTTTTATTAGAGTGGGGG
GAAAATAGAGGAAGAGAGTCTGTCTTTCTCCCCCCCACAGGTACCCTGTG
TCCCCAGACCTGCGCCTACCCCCTACTGATCTATCTCCTTATCCCTTGTC
CGCCCCCGTATTCGCCCGCCCCCTCCTCCGCCCTTCACCCTTTTTCCGCT
CGCGGTCTCTTCTTTTTTTCTTTCCCCCCCCCCTCTTTCTTCTCCCCCCT
TTTTCTTTTTTTTTTCCCCCCCCCCCCCCCCCCATCTACTCTGCTGTGCT
TATTTATTTTTATTATTTTTCCTTACCCGCCGGGGGGANAANCAATTATT
TCCTCCTCCTCCTTCTTTCTCTTACCCCCTCCCTTCCTCCCCTCCCCCTT
TTCTCTCTTACACCTCCCTTCCCTATCCTATCTTTTTTTTTTTCCTCATC
CTCCCCGCTCCCCTTCCACATCACTTCTCCTATTTTTTCTTCCCCTCCTC
CCCCCCCCTCCTTTTTCTCTTTGCTTCCTCTCTCCCTTCTCTAATATCCC
TTCTTTCACTCCCCCCCCTCATTTATCCACTCTCCGCCCCCTCCCTATTT
ACCTCTTCTAATCCATTTCCCTCTCATTCCTCCTCTTCCTCCTCTCTCTC
CCTTCACCCCTTTTCCCTTTTCTTTCTTCCTCCCCTATTTTTACGTCTCT
CTCCCCCTCTATTTCGTCCCTTTTTCTCGCCCCTTCCACTCTCACACTTT
TCTTATTATTCCTCTCCCTCTCCCCACCCTCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCAGAATGCTTTGAGGCAGA
AGACAATGGCAACTGACCTTTGGTTCCGGGAGGAAAAAAAGAAAAGAATG
CAGAAATCTCAAACTGTGGCTGTATGTATGCCCAGGTACACAGGGAAGAT
CTTGGGGACAGAATTGAAACTCCTGTCCTCTGGAGCCAGAGAAATTTGTG
TGGCTGGTTTTTTCTGCATCAGAACCTGTCCTCCCTCCTTGTGCCTGGGT
TGGACACTGCAGATGTAATTACCAATCTTATCAATAGTCCATGTTGTGGT
CTGAGCATCCTTAGTAATGTATCGTTTTGCTCCTGGGAACTTAGTTTGTG
TCACATTCAGAACAGAACCCCTCCCCGCCCCAGTCCACCCAGCAGCTCAG
AATAATGTCCAGAGCATTTAATCTTTCCCGTGAACAAGCTCTTTACGAAC
AGAATCCTGTTCGTTCTCTCTGTTTCCCTTTGAAGCAGGCTCAGCTAGAA
GTCAGGGGACTGAAGTGAGGTCAGAGAGCCGGCCTGTCAAGGGTACCTTT
CTCTGACTTTTCTTTGGCAAAGGAGAGGATTATAATAAATGTATTACAGG
ATTTTGCTTCTGGAAAAGTGATAAATGCTATTTTAAAAAAAAACCCTCTT
GACTACATTGCCTGACAATTTGAGAAATAATCTTACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_c15.b1 MSMg01no308_c15.b1 CHROMAT_FILE:
MSMg01no308_c15.b1 PHD_FILE: MSMg01no308_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:25 2005
         (117 letters)



>mm_chr5_117209824_117210340
          Length = 517

 Score =  219 bits (113), Expect = 6e-62
 Identities = 116/117 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaccaccattgtcgagagaagttcttttcgctcccaacttcttcagacttcctgtgta 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcaaccaccattgttgagagaagttcttttcgctcccaacttcttcagacttcctgtgta 258

                                                                    
Query: 61  gaccatgcttttttattagagtggggggaaaatagaggaagagagtctgtctttctc 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaccatgcttttttattagagtggggggaaaatagaggaagagagtctgtctttctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no308_c15.g1 MSMg01no308_c15.g1 CHROMAT_FILE:
MSMg01no308_c15.g1 PHD_FILE: MSMg01no308_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:25 2005
         (292 letters)



>mm_chr5_117053228_117053919
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcccagaatgctttgaggcagaagacaatggcaactgacctttggttccgggaggaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 actcccagaatgctttgaggcagaagacaatggcaactgacctttggtttagggaggaaa 260

                                                                       
Query: 61  aaaagaaaagaatgcagaaatctcaaactgtggctgtatgtatgcccaggtacacaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagaaaagaatgcagaaatctcaaactgtggctgtatgtatgcccaggtacacaggga 320

                                                                       
Query: 121 agatcttggggacagaattgaaactcctgtcctctggagccagagaaatttgtgtggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatcttggggacagaattgaaactcctgtcctctggagccagagaaatttgtgtggctg 380

                                                                       
Query: 181 gttttttctgcatcagaacctgtcctccctccttgtgcctgggttggacactgcagatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttttctgcatcagaacctgtcctccctccttgtgcctgggttggacactgcagatgt 440

                                                               
Query: 241 aattaccaatcttatcaatagtccatgttgtggtctgagcatccttagtaat 292
           ||||||||| |  |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattaccaagcaaatcaatagtccatgttgtggtctgagcatccttagtaat 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)