BAC Information

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BAC

Clone NameMSMg01-308D03
Chromosome5 (Build37)
Map Location 82,978,200 - 82,978,513
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308D03.T7 (MSMg01no308_d03.b1)MSMg01-308D03.TJ (MSMg01no308_d03.g1)
ACCAG432342AG432343
length747739
length of high quality
(start - end)
320 (45 - 364)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no308_d03.b1 PHD_FILE: MSMg01no308_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:27 2005CHROMAT_FILE: MSMg01no308_d03.g1 PHD_FILE: MSMg01no308_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAAATAATCGAGGTAAGTAGAGAAAAAAATAACTGTTCGTGTTA
ATAATTGTAGATAAATCATTCACTGTCAGCACAGTAGTGGAGATTAGAAC
TTTGTCAGCAAGATTTTGTACTGGGTTTTGGAAGGGTTTGAGGAGAATGA
TCAGAATGGAGTGGGAAGTTTGCAGTCATACATTTCCTTCATGGAAATAT
CAAACTGTTTTCCAAATGAAAAGTTTGAAATACTTTTTAGTTTCAGTATG
ACTTTATTACTCTAAGCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTTTGTTTTTTTTGCCTCCCCCCCTGCATTTAGTTTAGTA
TTCAGATAAACAAAATTCCCCCCCCCATATCACTAACATACATACTCCAG
GGTGCTGAAGTTGACACTGATATTTCTGCTTCCTCTCCCCATCTCTGCTT
TTATTTTCATGTTTCTTTAGAAGACTTTGTTCCTTTAGAAGATTCACAGA
TTTTTAATTACAGTCCTTCTCTTCCTTTTACCGTCTATACTTTTACCTGA
GCTAGATTTGACGCTACCATCTACTTACTTTCTTACACCTCTCCCCCTAT
TATTTTTAATCTGAGTATTGAGCCCTCTTTTCGCTCCGTTTTTAGGTCTT
TTTATTTTTTTTCTCCCCTCCTGTTTTGGCTTTCCGCACTATTATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAACTGC
AAATCAAAACAACCCTGTGATTCCACCTCACACCAGTTAGAATGGCTAAG
ATCAAAAATTCAGGTGACGGCAGATGCTGGGGAGGATGTGGAGAAAGAGG
AACACTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTTCGGTGACATCTNNAGCAATGCCCCAACCGGTAAGA
AAGCTTTTTTTTTTTTTTAACCTTACATAAAAAAAATATATAAGTTTGCT
TTGATTGTTGAGGACATTAAGTTTGAGCAACATAATGGGGTTGTTACGGG
ATGTCTAAATGTGTTAGTTCAACAAAAATAAGTATCTATTGTGGTAAAAT
AGCTGGCAGTTATCTGTTGCTCAAATAATAGAAAATGATGTATTTTAGAC
AGCGTTTTGAATTAAAGTGAGATCTTGTAATAGAATCATTCTGGACTGGT
TATGCTCGTTATGGACATTTAACGTATTCAGAAAGGAAACAATATCAAGC
ACATGTATAACTATATTCCAAAATACAATTTTATATAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_d03.b1 MSMg01no308_d03.b1 CHROMAT_FILE:
MSMg01no308_d03.b1 PHD_FILE: MSMg01no308_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:27 2005
         (320 letters)



>mm_chr5_82978040_82978758
          Length = 719

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctaaaataatcgaggtaagtagagaaaaaaataactgttcgtgttaataattg 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggaattcctaaaatagt-gaggtaagtagagaaaaaaataactgttcgtgttaataattg 416

                                                                       
Query: 64  tagataaatcattcactgtcagcacagtagtggagattagaactttgtcagcaagatttt 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tagataaatcagtcactgtcagcacagtagtggagattagaactttgtcagcaagatttt 356

                                                                       
Query: 124 gtactgggttttggaagggtttgaggagaatgatcagaatggagtgggaagtttgcagtc 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtattgggttttggaagggtttgaggagaatgatcagaatggagtgggaagtttgcagtc 296

                                                                       
Query: 184 atacatttccttcatggaaatatcaaactgttttccaaatgaaaagtttgaaatactttt 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 295 atacatttccttcatggaaatatcaaactgtcttccaaatgaaaagtttgaaatactttt 236

                                                                       
Query: 244 tagtttcagtatgactttattactctaagcactgtgtgtgtgtgtgtgtgtgtgtgtgtg 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 235 tagtttcagtatgactttattactctaagcactgtttgtgtgtgtgtgtgtgtgtgtgtg 176

                          
Query: 304 tgtgtgtgtgtgtgt 318
           |||||||||||||||
Sbjct: 175 tgtgtgtgtgtgtgt 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)